Overview
Package
Class
Tree
Deprecated
Index
Help
PREV NEXT
FRAMES
NO FRAMES
All Classes
A
B
C
D
E
F
G
I
J
L
M
N
O
P
R
S
T
V
A
ACOFactory
- class org.agmodel.bioinfo.antmap.
ACOFactory
.
ACOFactory()
- Constructor for class org.agmodel.bioinfo.antmap.
ACOFactory
ACOOptionPanel_jButtonLoad_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
ACOOptionPanel_jButtonLoad_actionAdapter
.
ACOOptionPanel_jButtonLoad_actionAdapter(AcoParamsPanel)
- Constructor for class org.agmodel.bioinfo.antmapgui.
ACOOptionPanel_jButtonLoad_actionAdapter
ACOOptionPanel_jButtonSave_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
ACOOptionPanel_jButtonSave_actionAdapter
.
ACOOptionPanel_jButtonSave_actionAdapter(AcoParamsPanel)
- Constructor for class org.agmodel.bioinfo.antmapgui.
ACOOptionPanel_jButtonSave_actionAdapter
AboutGplDialog
- class org.agmodel.bioinfo.antmapgui.
AboutGplDialog
.
AboutGplDialog()
- Constructor for class org.agmodel.bioinfo.antmapgui.
AboutGplDialog
AboutGplFrame
AboutGplFrame_jButton1_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
AboutGplFrame_jButton1_actionAdapter
.
AboutGplFrame_jButton1_actionAdapter(AboutGplDialog)
- Constructor for class org.agmodel.bioinfo.antmapgui.
AboutGplFrame_jButton1_actionAdapter
AcoMapFactory
- class org.agmodel.bioinfo.antmap.
AcoMapFactory
.
AcoMapFactory(AcoParamsBean)
- Constructor for class org.agmodel.bioinfo.antmap.
AcoMapFactory
AcoParamsBean
- class org.agmodel.bioinfo.antmap.
AcoParamsBean
.
AcoParamsBean()
- Constructor for class org.agmodel.bioinfo.antmap.
AcoParamsBean
コンストラクタ
AcoParamsPanel
- class org.agmodel.bioinfo.antmapgui.
AcoParamsPanel
.
JPanel for setting ACO parameters
AcoParamsPanel()
- Constructor for class org.agmodel.bioinfo.antmapgui.
AcoParamsPanel
AcoParamsReader
- class org.agmodel.bioinfo.antmap.
AcoParamsReader
.
AcoParamsReader()
- Constructor for class org.agmodel.bioinfo.antmap.
AcoParamsReader
AcoParamsWriter
- class org.agmodel.bioinfo.antmap.
AcoParamsWriter
.
AcoParamsWriter()
- Constructor for class org.agmodel.bioinfo.antmap.
AcoParamsWriter
Ant
- class org.agmodel.bioinfo.antmap.
Ant
.
Ant(AcoParamsBean, int, MersenneTwister)
- Constructor for class org.agmodel.bioinfo.antmap.
Ant
Construct an Ant object
AntColony
- class org.agmodel.bioinfo.antmap.
AntColony
.
AntColony(AcoParamsBean, double[][])
- Constructor for class org.agmodel.bioinfo.antmap.
AntColony
Construct an AntColony object (100% pure Java version of AntColony)
AntColony(AcoParamsBean, double[][], long)
- Constructor for class org.agmodel.bioinfo.antmap.
AntColony
Construct an AntColony object (100% pure Java version of AntColony)
AntColonyJNI
- class org.agmodel.bioinfo.antmap.
AntColonyJNI
.
AntColonyJNI(AcoParamsBean, double[][])
- Constructor for class org.agmodel.bioinfo.antmap.
AntColonyJNI
Construct an AntColonyJNI object (JNI version of AntColony)
AntColonyJNI(AcoParamsBean, double[][], long)
- Constructor for class org.agmodel.bioinfo.antmap.
AntColonyJNI
Construct an AntColony object (100% pure Java version of AntColony)
AntColonyOptimizer
- interface org.agmodel.bioinfo.antmap.
AntColonyOptimizer
.
AntColonyOrdering
- class org.agmodel.bioinfo.antmapgui.
AntColonyOrdering
.
A thread class for ordering loci by ACO algorithm
AntColonyOrdering(JTextArea, JTextArea, DrawMapPanel, JProgressBar, MapData[], SegDataBean, GroupExtractor, OrderingOptionBean, AcoParamsBean, ThreadIndicator)
- Constructor for class org.agmodel.bioinfo.antmapgui.
AntColonyOrdering
AntMap
- class org.agmodel.bioinfo.antmapgui.
AntMap
.
タイトル:
AntMap()
- Constructor for class org.agmodel.bioinfo.antmapgui.
AntMap
AntMapEngine
- class org.agmodel.bioinfo.antmapgui.
AntMapEngine
.
A main engine for calculation in AntMap
AntMapEngine(MainFrame)
- Constructor for class org.agmodel.bioinfo.antmapgui.
AntMapEngine
AntMapEngineException
- exception org.agmodel.bioinfo.antmapgui.
AntMapEngineException
.
An exception class for AntMapEngine
AntMapEngineException(String)
- Constructor for class org.agmodel.bioinfo.antmapgui.
AntMapEngineException
AntMapInfo
- class org.agmodel.bioinfo.antmapgui.
AntMapInfo
.
Information of AntMap software
AntMapInfo()
- Constructor for class org.agmodel.bioinfo.antmapgui.
AntMapInfo
AntMapOptionPanel
- class org.agmodel.bioinfo.antmapgui.
AntMapOptionPanel
.
Panel for setting options of AntMap
AntMapOptionPanel()
- Constructor for class org.agmodel.bioinfo.antmapgui.
AntMapOptionPanel
accept(File)
- Method in class org.agmodel.bioinfo.antmapgui.
MyFileFilter
acoMapFactory
- Variable in class org.agmodel.bioinfo.antmap.
BootStrapTester
acoParamsBean
- Variable in class org.agmodel.bioinfo.antmapgui.
AntColonyOrdering
acoParamsBean
- Variable in class org.agmodel.bioinfo.antmapgui.
BootstrapTest
acoParamsPanel
- Variable in class org.agmodel.bioinfo.antmapgui.
AntMapOptionPanel
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
ACOOptionPanel_jButtonLoad_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
ACOOptionPanel_jButtonSave_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
AboutGplFrame_jButton1_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
DblParamPanel_jButtonAlter_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
FontChooserPanel_jButton_Setting_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
FontChooser_jButton_Applly_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
FontChooser_jButton_Cancel_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
FontChooser_jButton_Preview_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
GetIntParameterPanel_jButtonAlter_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Boot_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Full_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Group_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Order_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Redraw_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Seg_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_File_Exit_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_File_Open_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Help_About_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Help_Gpl_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Save_Log_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Save_Map_actionAdapter
actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Save_Result_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
ACOOptionPanel_jButtonLoad_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
ACOOptionPanel_jButtonSave_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
AboutGplFrame_jButton1_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
DblParamPanel_jButtonAlter_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
FontChooserPanel_jButton_Setting_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
FontChooser_jButton_Applly_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
FontChooser_jButton_Cancel_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
FontChooser_jButton_Preview_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
GetIntParameterPanel_jButtonAlter_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel_jRadioButtonDist_changeAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Boot_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Full_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Group_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Order_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Redraw_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Seg_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_File_Exit_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_File_Open_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Help_About_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Help_Gpl_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Save_Log_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Save_Map_actionAdapter
adaptee
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Save_Result_actionAdapter
addChromosome(Chromosome)
- Method in class org.agmodel.bioinfo.segregation.
SegDataFactory
addItem(Object)
- Method in class org.agmodel.bioinfo.antmapgui.
ComboBoxPanel
addItem(String)
- Method in class org.agmodel.bioinfo.antmapgui.
RadioButtonPanel
addItems(Object[])
- Method in class org.agmodel.bioinfo.antmapgui.
ComboBoxPanel
addMarker(Marker, double)
- Method in class org.agmodel.bioinfo.segregation.
Chromosome
align(int[], double[][])
- Method in class org.agmodel.bioinfo.antmap.
OrderAligner
alignMarkers()
- Method in class org.agmodel.bioinfo.antmap.
MapData
align_simple(int[])
- Method in class org.agmodel.bioinfo.antmap.
OrderAligner
antMapEngine
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
antMapOptionPanel
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
B
BisectionBean
- class org.agmodel.bioinfo.common.
BisectionBean
.
BisectionBean()
- Constructor for class org.agmodel.bioinfo.common.
BisectionBean
BisectionBean.Function
- interface org.agmodel.bioinfo.common.
BisectionBean.Function
.
BootStrapTester
- class org.agmodel.bioinfo.antmap.
BootStrapTester
.
BootStrapTester(AcoMapFactory)
- Constructor for class org.agmodel.bioinfo.antmap.
BootStrapTester
BootstrapTest
- class org.agmodel.bioinfo.antmapgui.
BootstrapTest
.
Thread for bootstrap test
BootstrapTest(JTextArea, JTextArea, DrawMapPanel, JProgressBar, MapData[], SegDataBean, OrderingOptionBean, AcoParamsBean, ThreadIndicator)
- Constructor for class org.agmodel.bioinfo.antmapgui.
BootstrapTest
bestTour
- Variable in class org.agmodel.bioinfo.antmap.
AntColony
bootStrap(char[][])
- Method in class org.agmodel.bioinfo.antmap.
RMatrixFactory
bootstrapTest(OrderingOptionBean, AcoParamsBean)
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapEngine
borderLayout1
- Variable in class org.agmodel.bioinfo.antmapgui.
AboutGplDialog
borderLayout1
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
buttonGroup
- Variable in class org.agmodel.bioinfo.antmapgui.
RadioButtonPanel
buttonGroup1
- Variable in class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel
buttonGroup1
- Variable in class org.agmodel.bioinfo.antmapgui.
OrderingOptionPanel
buttonList
- Variable in class org.agmodel.bioinfo.antmapgui.
RadioButtonPanel
C
CR_DIST
- Static variable in class org.agmodel.bioinfo.antmap.
LGFactory
CR_DIST_NAME
- Static variable in class org.agmodel.bioinfo.antmap.
LGFactory
CR_LOD
- Static variable in class org.agmodel.bioinfo.antmap.
LGFactory
CR_LOD_NAME
- Static variable in class org.agmodel.bioinfo.antmap.
LGFactory
CR_P
- Static variable in class org.agmodel.bioinfo.antmap.
LGFactory
CR_P_NAME
- Static variable in class org.agmodel.bioinfo.antmap.
LGFactory
CR_R
- Static variable in class org.agmodel.bioinfo.antmap.
LGFactory
CR_R_NAME
- Static variable in class org.agmodel.bioinfo.antmap.
LGFactory
ChiSquareDist
- class org.agmodel.bioinfo.stat.
ChiSquareDist
.
ChiSquareDist()
- Constructor for class org.agmodel.bioinfo.stat.
ChiSquareDist
Chromosome
- class org.agmodel.bioinfo.segregation.
Chromosome
.
Chromosome()
- Constructor for class org.agmodel.bioinfo.segregation.
Chromosome
Chromosome(String)
- Constructor for class org.agmodel.bioinfo.segregation.
Chromosome
ComboBoxPanel
- class org.agmodel.bioinfo.antmapgui.
ComboBoxPanel
.
Panel with jComboBox
ComboBoxPanel()
- Constructor for class org.agmodel.bioinfo.antmapgui.
ComboBoxPanel
ComboBoxPanel(String)
- Constructor for class org.agmodel.bioinfo.antmapgui.
ComboBoxPanel
ComboBoxPanel(String, Object[])
- Constructor for class org.agmodel.bioinfo.antmapgui.
ComboBoxPanel
cbpFontName
- Variable in class org.agmodel.bioinfo.antmapgui.
FontChooser
cbpFontStyle
- Variable in class org.agmodel.bioinfo.antmapgui.
FontChooser
cbpTargetedGroup
- Variable in class org.agmodel.bioinfo.antmapgui.
OrderingOptionPanel
clear()
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapPanel
compareTo(Object)
- Method in class org.agmodel.bioinfo.antmap.
MarkerBean
compareTo(MarkerBean)
- Method in class org.agmodel.bioinfo.antmap.
MarkerBean
contentPane
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
convertD2E(double[][])
- Method in class org.agmodel.bioinfo.antmap.
EMatrixFactory
convertR2D(double[][], int)
- Method in class org.agmodel.bioinfo.antmap.
DMatrixFactory
convertR2D_terminal(double[][], double, int)
- Method in class org.agmodel.bioinfo.antmap.
DMatrixFactory
convertR2LeqD(double[][])
- Method in class org.agmodel.bioinfo.antmap.
LeqDMatrixFactory
convertRN2LD(double[][], int[][])
- Method in class org.agmodel.bioinfo.antmap.
LDMatrixFactory
convertSegData2R_BC(char[][])
- Method in class org.agmodel.bioinfo.antmap.
RMatrixFactory
convertSegData2R_DH(char[][])
- Method in class org.agmodel.bioinfo.antmap.
RMatrixFactory
convertSegData2R_F2(char[][], int[])
- Method in class org.agmodel.bioinfo.antmap.
RMatrixFactory
convertSegData2R_RIL(char[][])
- Method in class org.agmodel.bioinfo.antmap.
RMatrixFactory
D
DMatrixFactory
- class org.agmodel.bioinfo.antmap.
DMatrixFactory
.
DMatrixFactory()
- Constructor for class org.agmodel.bioinfo.antmap.
DMatrixFactory
DblParamPanel
- class org.agmodel.bioinfo.antmapgui.
DblParamPanel
.
Panel for inputing a parameter in double
DblParamPanel()
- Constructor for class org.agmodel.bioinfo.antmapgui.
DblParamPanel
DblParamPanel(String, double, int)
- Constructor for class org.agmodel.bioinfo.antmapgui.
DblParamPanel
DblParamPanel_jButtonAlter_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
DblParamPanel_jButtonAlter_actionAdapter
.
DblParamPanel_jButtonAlter_actionAdapter(DblParamPanel)
- Constructor for class org.agmodel.bioinfo.antmapgui.
DblParamPanel_jButtonAlter_actionAdapter
DrawMapOptionBean
- class org.agmodel.bioinfo.antmapgui.
DrawMapOptionBean
.
Bean for containing values of options for a linkage map drawing
DrawMapOptionBean()
- Constructor for class org.agmodel.bioinfo.antmapgui.
DrawMapOptionBean
DrawMapOptionPanel
- class org.agmodel.bioinfo.antmapgui.
DrawMapOptionPanel
.
タイトル:
DrawMapOptionPanel()
- Constructor for class org.agmodel.bioinfo.antmapgui.
DrawMapOptionPanel
DrawMapPanel
- class org.agmodel.bioinfo.antmapgui.
DrawMapPanel
.
タイトル:
DrawMapPanel()
- Constructor for class org.agmodel.bioinfo.antmapgui.
DrawMapPanel
depart(double[][])
- Method in class org.agmodel.bioinfo.antmap.
Ant
Set out on a journey
dppAlpha
- Variable in class org.agmodel.bioinfo.antmapgui.
AcoParamsPanel
dppBeta
- Variable in class org.agmodel.bioinfo.antmapgui.
AcoParamsPanel
dppInitTau
- Variable in class org.agmodel.bioinfo.antmapgui.
AcoParamsPanel
dppPFancy
- Variable in class org.agmodel.bioinfo.antmapgui.
AcoParamsPanel
dppQ
- Variable in class org.agmodel.bioinfo.antmapgui.
AcoParamsPanel
dppRho
- Variable in class org.agmodel.bioinfo.antmapgui.
AcoParamsPanel
dppScaleFactor
- Variable in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionPanel
dppThreshold
- Variable in class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel
dppWeight
- Variable in class org.agmodel.bioinfo.antmapgui.
AcoParamsPanel
drawEachMap(MapData, int, int)
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapPanel
drawMap(MapData[])
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapPanel
drawMapOptionPanel
- Variable in class org.agmodel.bioinfo.antmapgui.
AntMapOptionPanel
drawMapPanel
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
E
EMatrixFactory
- class org.agmodel.bioinfo.antmap.
EMatrixFactory
.
EMatrixFactory()
- Constructor for class org.agmodel.bioinfo.antmap.
EMatrixFactory
execute()
- Method in class org.agmodel.bioinfo.antmap.
LinkageAnalyzer
組換え価の計算
extractParitalArray(int[], int[])
- Method in class org.agmodel.bioinfo.antmap.
PartialExtractor
extractParitalArray(String[], int[])
- Method in class org.agmodel.bioinfo.antmap.
PartialExtractor
extractPartialGenotypeData(char[][], int[])
- Method in class org.agmodel.bioinfo.antmap.
PartialExtractor
extractPartialMatrix(double[][], int[])
- Method in class org.agmodel.bioinfo.antmap.
PartialExtractor
F
FileFormatException
- exception org.agmodel.bioinfo.common.
FileFormatException
.
FileFormatException(String)
- Constructor for class org.agmodel.bioinfo.common.
FileFormatException
FisherInfoForRBean
- class org.agmodel.bioinfo.segregation.
FisherInfoForRBean
.
FisherInfoForRBean()
- Constructor for class org.agmodel.bioinfo.segregation.
FisherInfoForRBean
コンストラクタ
FontChooser
- class org.agmodel.bioinfo.antmapgui.
FontChooser
.
タイトル:
FontChooser(Frame, String, boolean)
- Constructor for class org.agmodel.bioinfo.antmapgui.
FontChooser
FontChooser(Frame)
- Constructor for class org.agmodel.bioinfo.antmapgui.
FontChooser
FontChooser()
- Constructor for class org.agmodel.bioinfo.antmapgui.
FontChooser
FontChooserPanel
- class org.agmodel.bioinfo.antmapgui.
FontChooserPanel
.
タイトル:
FontChooserPanel()
- Constructor for class org.agmodel.bioinfo.antmapgui.
FontChooserPanel
FontChooserPanel_jButton_Setting_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
FontChooserPanel_jButton_Setting_actionAdapter
.
FontChooserPanel_jButton_Setting_actionAdapter(FontChooserPanel)
- Constructor for class org.agmodel.bioinfo.antmapgui.
FontChooserPanel_jButton_Setting_actionAdapter
FontChooser_jButton_Applly_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
FontChooser_jButton_Applly_actionAdapter
.
FontChooser_jButton_Applly_actionAdapter(FontChooser)
- Constructor for class org.agmodel.bioinfo.antmapgui.
FontChooser_jButton_Applly_actionAdapter
FontChooser_jButton_Cancel_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
FontChooser_jButton_Cancel_actionAdapter
.
FontChooser_jButton_Cancel_actionAdapter(FontChooser)
- Constructor for class org.agmodel.bioinfo.antmapgui.
FontChooser_jButton_Cancel_actionAdapter
FontChooser_jButton_Preview_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
FontChooser_jButton_Preview_actionAdapter
.
FontChooser_jButton_Preview_actionAdapter(FontChooser)
- Constructor for class org.agmodel.bioinfo.antmapgui.
FontChooser_jButton_Preview_actionAdapter
fcpGroupName
- Variable in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionPanel
fcpMarkerInfo
- Variable in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionPanel
findBestTour()
- Method in class org.agmodel.bioinfo.antmap.
AntColony
Find the best tour by using Ant Colony Optimization
findBestTour()
- Method in class org.agmodel.bioinfo.antmap.
AntColonyJNI
Find the best tour by using Ant Colony Optimization
findBestTour()
- Method in interface org.agmodel.bioinfo.antmap.
AntColonyOptimizer
Find the best tour by using Ant Colony Optimization
flowLayout1
- Variable in class org.agmodel.bioinfo.antmapgui.
ComboBoxPanel
flowLayout1
- Variable in class org.agmodel.bioinfo.antmapgui.
FontChooserPanel
format(String, int, boolean)
- Method in class org.agmodel.bioinfo.common.
StringFormat
G
GOFChiSqrTest
- class org.agmodel.bioinfo.stat.
GOFChiSqrTest
.
GOFChiSqrTest(int[], double[])
- Constructor for class org.agmodel.bioinfo.stat.
GOFChiSqrTest
Constructor
GPLFILE
- Static variable in class org.agmodel.bioinfo.antmapgui.
AboutGplDialog
GetIntParameterPanel_jButtonAlter_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
GetIntParameterPanel_jButtonAlter_actionAdapter
.
GetIntParameterPanel_jButtonAlter_actionAdapter(IntParamPanel)
- Constructor for class org.agmodel.bioinfo.antmapgui.
GetIntParameterPanel_jButtonAlter_actionAdapter
GroupDivider
- class org.agmodel.bioinfo.antmap.
GroupDivider
.
GroupDivider()
- Constructor for class org.agmodel.bioinfo.antmap.
GroupDivider
GroupExtractor
- class org.agmodel.bioinfo.antmap.
GroupExtractor
.
GroupExtractor(int[])
- Constructor for class org.agmodel.bioinfo.antmap.
GroupExtractor
GroupExtractor(int[], int)
- Constructor for class org.agmodel.bioinfo.antmap.
GroupExtractor
GroupingOptionBean
- class org.agmodel.bioinfo.antmap.
GroupingOptionBean
.
GroupingOptionBean()
- Constructor for class org.agmodel.bioinfo.antmap.
GroupingOptionBean
GroupingOptionPanel
- class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel
.
タイトル:
GroupingOptionPanel()
- Constructor for class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel
GroupingOptionPanel_jRadioButtonDist_changeAdapter
- class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel_jRadioButtonDist_changeAdapter
.
GroupingOptionPanel_jRadioButtonDist_changeAdapter(GroupingOptionPanel)
- Constructor for class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel_jRadioButtonDist_changeAdapter
getAcoParams()
- Method in class org.agmodel.bioinfo.antmap.
AcoMapFactory
getAcoParamsBean()
- Method in class org.agmodel.bioinfo.antmapgui.
AcoParamsPanel
getAcoParamsBean()
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapOptionPanel
getAlpha()
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsBean
getAntColonyOptimizer(AcoParamsBean, double[][])
- Method in class org.agmodel.bioinfo.antmap.
ACOFactory
getAntColonyOptimizer(AcoParamsBean, double[][], long)
- Method in class org.agmodel.bioinfo.antmap.
ACOFactory
getBestMap(SegDataBean, int[], int, int)
- Method in class org.agmodel.bioinfo.antmap.
AcoMapFactory
getBeta()
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsBean
getBootProb()
- Method in class org.agmodel.bioinfo.antmap.
MarkerBean
getBootStrapMap(SegDataBean, int[], int, int)
- Method in class org.agmodel.bioinfo.antmap.
AcoMapFactory
getBootStrappedR(SegDataBean)
- Method in class org.agmodel.bioinfo.antmap.
RMatrixFactory
getBootStrappedR(SegDataBean, int[])
- Method in class org.agmodel.bioinfo.antmap.
RMatrixFactory
getChi2()
- Method in class org.agmodel.bioinfo.segregation.
RecombinationBean
getChiSqr()
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
getChiSqr()
- Method in class org.agmodel.bioinfo.stat.
GOFChiSqrTest
Get chi-square value
getContactAddress()
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapInfo
Get contact address
getCopyright()
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapInfo
Get copyright
getCriterion()
- Method in class org.agmodel.bioinfo.antmap.
GroupingOptionBean
getCriterion()
- Method in class org.agmodel.bioinfo.antmap.
OrderingOptionBean
getCriterion()
- Method in class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel
getCriterionName(int)
- Method in class org.agmodel.bioinfo.antmap.
LGFactory
getCriterionName(int)
- Static method in class org.agmodel.bioinfo.antmap.
OrderingCriterion
getDescription()
- Method in class org.agmodel.bioinfo.antmapgui.
MyFileFilter
getDistance(double)
- Method in class org.agmodel.bioinfo.segregation.
MapFunction
getDrawMapOptionBean()
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapOptionPanel
getDrawMapOptionBean()
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionPanel
getDrawMapOptionBean()
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapPanel
getExpRatio()
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
get observed ratio
getExtension()
- Method in class org.agmodel.bioinfo.antmapgui.
MyFileFilter
getFisherInfo_BC(double, double)
- Method in class org.agmodel.bioinfo.segregation.
FisherInfoForRBean
Calculate Fisher's amount of information in BC generation
getFisherInfo_DH(double, double)
- Method in class org.agmodel.bioinfo.segregation.
FisherInfoForRBean
Calculate Fisher's amount of information in DH generation
getFisherInfo_F2_CC(double, double)
- Method in class org.agmodel.bioinfo.segregation.
FisherInfoForRBean
Calculate Fisher's amount of information between codominant markers in F2 generation
getFisherInfo_F2_CD(double, double)
- Method in class org.agmodel.bioinfo.segregation.
FisherInfoForRBean
Calculate Fisher's amount of information between codominant and domiant markers in F2 generation
getFisherInfo_F2_DD_Cup(double, double)
- Method in class org.agmodel.bioinfo.segregation.
FisherInfoForRBean
Calculate Fisher's amount of information between domiant markers in coupling phase in F2 generation
getFisherInfo_F2_DD_Rep(double, double)
- Method in class org.agmodel.bioinfo.segregation.
FisherInfoForRBean
Calculate Fisher's amount of information between domiant markers in repulsion phase in F2 generation
getFisherInfo_RIL(double, double)
- Method in class org.agmodel.bioinfo.segregation.
FisherInfoForRBean
Calculate Fisher's amount of information in RIL generation
getFontGroupName()
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionBean
getFontMarkerInfo()
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionBean
getFunction()
- Method in class org.agmodel.bioinfo.segregation.
MapFunction
getFunctionName(int)
- Static method in class org.agmodel.bioinfo.segregation.
MapFunction
getGamete()
- Method in class org.agmodel.bioinfo.segregation.
Chromosome
getGenotype()
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
getGenotypeData()
- Method in class org.agmodel.bioinfo.antmap.
SegDataBean
get segregation data
getGplNotice()
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapInfo
Get GPL notice
getGroupExtractor(SegDataBean, int, int, double, int)
- Method in class org.agmodel.bioinfo.antmap.
LGFactory
getGroupIndex()
- Method in class org.agmodel.bioinfo.antmap.
OrderingOptionBean
getGroupIndex()
- Method in class org.agmodel.bioinfo.antmapgui.
OrderingOptionPanel
getGroupingIndex(double[][], double, boolean)
- Method in class org.agmodel.bioinfo.antmap.
GroupDivider
getGroupingIndexNNL(double[][], double, boolean)
- Method in class org.agmodel.bioinfo.antmap.
GroupDivider
getGroupingOptionBean()
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapOptionPanel
getGroupingOptionBean()
- Method in class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel
getHaldaneDistance(double)
- Method in class org.agmodel.bioinfo.segregation.
MapFunction
Calculate map distance from recombination rate on the basis of Holdane's function
getHaldaneRate(double)
- Method in class org.agmodel.bioinfo.segregation.
MapFunction
Calculate recombination rate from map distance on the basis of Holdane's function
getIndex()
- Method in class org.agmodel.bioinfo.antmap.
MarkerBean
getInit_tau()
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsBean
getKosambiDistance(double)
- Method in class org.agmodel.bioinfo.segregation.
MapFunction
Calculate map distance from recombination rate on the basis of Kosambi's function
getKosambiRate(double)
- Method in class org.agmodel.bioinfo.segregation.
MapFunction
Calculate recombination rate from map distance on the basis of Kosambi's function
getLength()
- Method in class org.agmodel.bioinfo.antmap.
MapData
getLength()
- Method in class org.agmodel.bioinfo.segregation.
Chromosome
getLocation()
- Method in class org.agmodel.bioinfo.antmap.
MarkerBean
getLocation()
- Method in class org.agmodel.bioinfo.segregation.
Marker
getLod()
- Method in class org.agmodel.bioinfo.antmap.
LinkageAnalyzer
getLod()
- Method in class org.agmodel.bioinfo.segregation.
RecombinationBean
getLowerProb(int, double)
- Static method in class org.agmodel.bioinfo.stat.
ChiSquareDist
Calculate lower probability
getLowerProb(double)
- Static method in class org.agmodel.bioinfo.stat.
NormalDist
Calculate lower probability for normal distribution
getMapFunction()
- Method in class org.agmodel.bioinfo.antmap.
GroupingOptionBean
getMapFunction()
- Method in class org.agmodel.bioinfo.antmap.
LGFactory
getMapFunction()
- Method in class org.agmodel.bioinfo.antmap.
MapData
getMapFunction()
- Method in class org.agmodel.bioinfo.antmap.
OrderingOptionBean
getMapSpacing()
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionBean
getMarginSize()
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionBean
getMarker(int)
- Method in class org.agmodel.bioinfo.antmap.
MapData
getMarkerArray()
- Method in class org.agmodel.bioinfo.segregation.
Chromosome
getMarkerBootProb(int)
- Method in class org.agmodel.bioinfo.antmap.
MapData
getMarkerIndex(int)
- Method in class org.agmodel.bioinfo.antmap.
MapData
getMarkerIndexArray()
- Method in class org.agmodel.bioinfo.antmap.
MapData
getMarkerIndices(int)
- Method in class org.agmodel.bioinfo.antmap.
GroupExtractor
getMarkerLocation(int)
- Method in class org.agmodel.bioinfo.antmap.
MapData
getMarkerLocationArray()
- Method in class org.agmodel.bioinfo.segregation.
Chromosome
getMarkerName(int)
- Method in class org.agmodel.bioinfo.antmap.
MapData
getMarkerName()
- Method in class org.agmodel.bioinfo.antmap.
SegDataBean
getMarkerNameArray()
- Method in class org.agmodel.bioinfo.segregation.
Chromosome
getMarkerType()
- Method in class org.agmodel.bioinfo.antmap.
SegDataBean
getMarkerType(char[])
- Method in class org.agmodel.bioinfo.segregation.
MarkerTypeGetter
Obtain marker type
getMarkerType()
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
getMarkerTypeArray()
- Method in class org.agmodel.bioinfo.segregation.
Chromosome
getMarkerTypeArray(char[][])
- Method in class org.agmodel.bioinfo.segregation.
MarkerTypeGetter
Obtain marker type Array
getMaxIteration()
- Method in class org.agmodel.bioinfo.antmap.
OrderingOptionBean
getMessage()
- Method in class org.agmodel.bioinfo.antmapgui.
MyFileFilter
getMethod()
- Method in class org.agmodel.bioinfo.antmap.
GroupingOptionBean
getMethodName(int)
- Method in class org.agmodel.bioinfo.antmap.
LGFactory
getMinNMarker()
- Method in class org.agmodel.bioinfo.antmap.
GroupingOptionBean
getN()
- Method in class org.agmodel.bioinfo.antmap.
LinkageAnalyzer
getN(SegDataBean)
- Method in class org.agmodel.bioinfo.antmap.
NMatrixFactory
getN(SegDataBean, int[])
- Method in class org.agmodel.bioinfo.antmap.
NMatrixFactory
getN()
- Method in class org.agmodel.bioinfo.segregation.
RecombinationBean
getNBootstrap()
- Method in class org.agmodel.bioinfo.antmap.
OrderingOptionBean
getNConfirm()
- Method in class org.agmodel.bioinfo.antmap.
OrderingOptionBean
getNMarker()
- Method in class org.agmodel.bioinfo.antmap.
MapData
getNMarker()
- Method in class org.agmodel.bioinfo.segregation.
Chromosome
getN_ant()
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsBean
getN_data()
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
getN_exp()
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
getN_group()
- Method in class org.agmodel.bioinfo.antmap.
GroupExtractor
getN_individual()
- Method in class org.agmodel.bioinfo.antmap.
SegDataBean
get the number of individuals
getN_iteration()
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsBean
getN_marker(int)
- Method in class org.agmodel.bioinfo.antmap.
GroupExtractor
getN_marker()
- Method in class org.agmodel.bioinfo.antmap.
SegDataBean
get the number of markers
getN_miss()
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
getN_obs()
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
getN_valid()
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
get the number of valid data
getName()
- Method in class org.agmodel.bioinfo.antmap.
MapData
getName()
- Method in class org.agmodel.bioinfo.antmap.
MarkerBean
getName()
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapInfo
Get name
getName()
- Method in class org.agmodel.bioinfo.segregation.
Chromosome
getName()
- Method in class org.agmodel.bioinfo.segregation.
Marker
getObsRatio()
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
get observed ratio
getOrderedIndex(int[], int[])
- Method in class org.agmodel.bioinfo.antmap.
IndexConverter
getOrderingOptionBean()
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapOptionPanel
getOrderingOptionBean()
- Method in class org.agmodel.bioinfo.antmapgui.
OrderingOptionPanel
getP()
- Method in class org.agmodel.bioinfo.antmap.
LinkageAnalyzer
getP()
- Method in class org.agmodel.bioinfo.segregation.
RecombinationBean
getP()
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
getP()
- Method in class org.agmodel.bioinfo.stat.
GOFChiSqrTest
Get probability under null hypothesis,
getP_fancy()
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsBean
getPanelHeight()
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapPanel
getPanelWidth()
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapPanel
getPhenotype(int, double)
- Method in class org.agmodel.bioinfo.segregation.
Chromosome
getPhenotype(int)
- Method in class org.agmodel.bioinfo.segregation.
Chromosome
getPreferredSize()
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapPanel
getQ()
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsBean
getR()
- Method in class org.agmodel.bioinfo.antmap.
LinkageAnalyzer
getR(SegDataBean)
- Method in class org.agmodel.bioinfo.antmap.
RMatrixFactory
getR(SegDataBean, int[])
- Method in class org.agmodel.bioinfo.antmap.
RMatrixFactory
getR_BC(char[], char[])
- Method in class org.agmodel.bioinfo.segregation.
TwoPointAnalysis
getR_DH(char[], char[])
- Method in class org.agmodel.bioinfo.segregation.
TwoPointAnalysis
getR_F2(char[], char[], int, int)
- Method in class org.agmodel.bioinfo.segregation.
TwoPointAnalysis
getR_RIL(char[], char[])
- Method in class org.agmodel.bioinfo.segregation.
TwoPointAnalysis
getRange()
- Method in class org.agmodel.bioinfo.antmapgui.
DblParamPanel
getRange()
- Method in class org.agmodel.bioinfo.antmapgui.
IntParamPanel
getRate(double)
- Method in class org.agmodel.bioinfo.segregation.
MapFunction
getRecombinationBean_BC(char[], char[])
- Method in class org.agmodel.bioinfo.segregation.
TwoPointAnalysis
Calculate recombination rate for backcross
getRecombinationBean_DH(char[], char[])
- Method in class org.agmodel.bioinfo.segregation.
TwoPointAnalysis
Calculate recombination rate for doubled haploid
getRecombinationBean_F2(char[], char[], int, int)
- Method in class org.agmodel.bioinfo.segregation.
TwoPointAnalysis
Calculate recombination rate for F2
getRecombinationBean_RIL(char[], char[])
- Method in class org.agmodel.bioinfo.segregation.
TwoPointAnalysis
Calculate recombination rate for recombinant inbred line
getRho()
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsBean
getScaleFactor()
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionBean
getSeed()
- Method in class org.agmodel.bioinfo.antmap.
AntColonyJNI
getSeg()
- Method in class org.agmodel.bioinfo.antmap.
LinkageAnalyzer
getSegData(String)
- Method in class org.agmodel.bioinfo.antmap.
SegDataReader
getSegData(int, int, double)
- Method in class org.agmodel.bioinfo.segregation.
SegDataFactory
getSegType()
- Method in class org.agmodel.bioinfo.antmap.
SegDataBean
get segregation type
getSegType()
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
getSegTypeCode(int)
- Static method in class org.agmodel.bioinfo.segregation.
SegType
getSegTypeName(int)
- Static method in class org.agmodel.bioinfo.segregation.
SegType
getSelectedFont()
- Method in class org.agmodel.bioinfo.antmapgui.
FontChooser
getSelectedFont()
- Method in class org.agmodel.bioinfo.antmapgui.
FontChooserPanel
getSelectedIndex()
- Method in class org.agmodel.bioinfo.antmapgui.
ComboBoxPanel
getSelectedIndex()
- Method in class org.agmodel.bioinfo.antmapgui.
RadioButtonPanel
getSelectedItem()
- Method in class org.agmodel.bioinfo.antmapgui.
ComboBoxPanel
getSigStars()
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
get starts for significance test
getStd_BC(double, double)
- Method in class org.agmodel.bioinfo.segregation.
FisherInfoForRBean
Calculate standard deviation of recombination rate in BC generation
getStd_DH(double, double)
- Method in class org.agmodel.bioinfo.segregation.
FisherInfoForRBean
Calculate standard deviation of recombination rate in DH generation
getStd_F2_CC(double, double)
- Method in class org.agmodel.bioinfo.segregation.
FisherInfoForRBean
Calculate standard deviation of recombination rate between codomiannt markers in F2 generation
getStd_F2_CD(double, double)
- Method in class org.agmodel.bioinfo.segregation.
FisherInfoForRBean
Calculate standard deviation of recombination rate between codominant and dominant markers in F2 generation
getStd_F2_DD_Cup(double, double)
- Method in class org.agmodel.bioinfo.segregation.
FisherInfoForRBean
Calculate standard deviation of recombination rate between dominant markers in couplihng phase in F2 generation
getStd_F2_DD_Rep(double, double)
- Method in class org.agmodel.bioinfo.segregation.
FisherInfoForRBean
Calculate standard deviation of recombination rate between dominant markers in repulsion phase in F2 generation
getStd_RIL(double, double)
- Method in class org.agmodel.bioinfo.segregation.
FisherInfoForRBean
Calculate standard deviation of recombination rate in RIL generation
getText()
- Method in class org.agmodel.bioinfo.antmapgui.
ComboBoxPanel
getText()
- Method in class org.agmodel.bioinfo.antmapgui.
DblParamPanel
getText()
- Method in class org.agmodel.bioinfo.antmapgui.
FontChooserPanel
getText()
- Method in class org.agmodel.bioinfo.antmapgui.
IntParamPanel
getText()
- Method in class org.agmodel.bioinfo.antmapgui.
RadioButtonPanel
getThreshold()
- Method in class org.agmodel.bioinfo.antmap.
GroupingOptionBean
getTourLength()
- Method in class org.agmodel.bioinfo.antmap.
TourBean
getTourOrder()
- Method in class org.agmodel.bioinfo.antmap.
Ant
Get tour order
getTourOrder()
- Method in class org.agmodel.bioinfo.antmap.
TourBean
getType()
- Method in class org.agmodel.bioinfo.segregation.
Marker
getUpperProb(int, double)
- Static method in class org.agmodel.bioinfo.stat.
ChiSquareDist
Calculate upper probability
getUpperProb(double)
- Static method in class org.agmodel.bioinfo.stat.
NormalDist
Calculate upper probability for normal distribution
getValue()
- Method in class org.agmodel.bioinfo.antmapgui.
DblParamPanel
getValue()
- Method in class org.agmodel.bioinfo.antmapgui.
IntParamPanel
getValue()
- Method in class org.agmodel.bioinfo.segregation.
RecombinationBean
getVersion()
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapInfo
Get version
getWebAddress()
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapInfo
Get web address
getWeight()
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsBean
getZygote(int)
- Method in class org.agmodel.bioinfo.segregation.
Chromosome
gridLayout1
- Variable in class org.agmodel.bioinfo.antmapgui.
AcoParamsPanel
gridLayout1
- Variable in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionPanel
gridLayout1
- Variable in class org.agmodel.bioinfo.antmapgui.
FontChooser
gridLayout1
- Variable in class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel
gridLayout1
- Variable in class org.agmodel.bioinfo.antmapgui.
OrderingOptionPanel
groupExtractor
- Variable in class org.agmodel.bioinfo.antmapgui.
AntColonyOrdering
groupExtractor
- Variable in class org.agmodel.bioinfo.antmapgui.
AntMapEngine
groupList
- Variable in class org.agmodel.bioinfo.antmap.
GroupExtractor
groupingOptionPanel
- Variable in class org.agmodel.bioinfo.antmapgui.
AntMapOptionPanel
I
IndexConverter
- class org.agmodel.bioinfo.antmap.
IndexConverter
.
IndexConverter()
- Constructor for class org.agmodel.bioinfo.antmap.
IndexConverter
IntParamPanel
- class org.agmodel.bioinfo.antmapgui.
IntParamPanel
.
タイトル:
IntParamPanel()
- Constructor for class org.agmodel.bioinfo.antmapgui.
IntParamPanel
IntParamPanel(String, int, int)
- Constructor for class org.agmodel.bioinfo.antmapgui.
IntParamPanel
inService
- Variable in class org.agmodel.bioinfo.antmapgui.
ThreadIndicator
ippFontSize
- Variable in class org.agmodel.bioinfo.antmapgui.
FontChooser
ippMapSpacing
- Variable in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionPanel
ippMarginSize
- Variable in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionPanel
ippMinNMarker
- Variable in class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel
ippNAnt
- Variable in class org.agmodel.bioinfo.antmapgui.
AcoParamsPanel
ippNBootstrap
- Variable in class org.agmodel.bioinfo.antmapgui.
OrderingOptionPanel
ippNIteration
- Variable in class org.agmodel.bioinfo.antmapgui.
AcoParamsPanel
ippNIteration
- Variable in class org.agmodel.bioinfo.antmapgui.
OrderingOptionPanel
isApplied()
- Method in class org.agmodel.bioinfo.antmapgui.
FontChooser
isError()
- Method in class org.agmodel.bioinfo.segregation.
RecombinationBean
isInService()
- Method in class org.agmodel.bioinfo.antmapgui.
ThreadIndicator
isRandomize()
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsBean
isShowBootstrapValue()
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionBean
isShowBootstrapValue()
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionPanel
J
jButton1
- Variable in class org.agmodel.bioinfo.antmapgui.
AboutGplDialog
jButton1_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
AboutGplDialog
jButtonAlter
- Variable in class org.agmodel.bioinfo.antmapgui.
DblParamPanel
jButtonAlter
- Variable in class org.agmodel.bioinfo.antmapgui.
IntParamPanel
jButtonAlter_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
DblParamPanel
jButtonAlter_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
IntParamPanel
jButtonLoad
- Variable in class org.agmodel.bioinfo.antmapgui.
AcoParamsPanel
jButtonLoad_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
AcoParamsPanel
jButtonSave
- Variable in class org.agmodel.bioinfo.antmapgui.
AcoParamsPanel
jButtonSave_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
AcoParamsPanel
jButton_Applly
- Variable in class org.agmodel.bioinfo.antmapgui.
FontChooser
jButton_Applly_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
FontChooser
jButton_Cancel
- Variable in class org.agmodel.bioinfo.antmapgui.
FontChooser
jButton_Cancel_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
FontChooser
jButton_Preview
- Variable in class org.agmodel.bioinfo.antmapgui.
FontChooser
jButton_Preview_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
FontChooser
jButton_Setting
- Variable in class org.agmodel.bioinfo.antmapgui.
FontChooserPanel
jButton_Setting_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
FontChooserPanel
jComboBox1
- Variable in class org.agmodel.bioinfo.antmapgui.
ComboBoxPanel
jFileChooser1
- Variable in class org.agmodel.bioinfo.antmapgui.
AcoParamsPanel
jFileChooser1
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jLabel1
- Variable in class org.agmodel.bioinfo.antmapgui.
ComboBoxPanel
jLabel1
- Variable in class org.agmodel.bioinfo.antmapgui.
RadioButtonPanel
jLabel2
- Variable in class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel
jLabelText
- Variable in class org.agmodel.bioinfo.antmapgui.
DblParamPanel
jLabelText
- Variable in class org.agmodel.bioinfo.antmapgui.
IntParamPanel
jLabelValue
- Variable in class org.agmodel.bioinfo.antmapgui.
DblParamPanel
jLabelValue
- Variable in class org.agmodel.bioinfo.antmapgui.
IntParamPanel
jLabel_FontInfo
- Variable in class org.agmodel.bioinfo.antmapgui.
FontChooserPanel
jLabel_Status
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jLabel_Text
- Variable in class org.agmodel.bioinfo.antmapgui.
FontChooserPanel
jMenuBar
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Anal_Boot
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Anal_Boot_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Anal_Full
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Anal_Full_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Anal_Group
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Anal_Group_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Anal_Order
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Anal_Order_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Anal_Redraw
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Anal_Redraw_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Anal_Seg
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Anal_Seg_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_File_Exit
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_File_Exit_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_File_Open
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_File_Open_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Help_About
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Help_About_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Help_Gpl
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Help_Gpl_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Save_Log
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Save_Log_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Save_Map
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Save_Map_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Save_Result
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenuItem_Save_Result_actionPerformed(ActionEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenu_Anal
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenu_File
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenu_Help
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jMenu_Save
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jPanel1
- Variable in class org.agmodel.bioinfo.antmapgui.
AboutGplDialog
jPanel1
- Variable in class org.agmodel.bioinfo.antmapgui.
AcoParamsPanel
jPanel1
- Variable in class org.agmodel.bioinfo.antmapgui.
FontChooser
jPanel2
- Variable in class org.agmodel.bioinfo.antmapgui.
FontChooser
jPanel2
- Variable in class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel
jProgressBar
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jRadioButtonDist
- Variable in class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel
jRadioButtonDist_stateChanged(ChangeEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel
jRadioButtonLOD
- Variable in class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel
jRadioButtonP
- Variable in class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel
jRadioButtonR
- Variable in class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel
jScrollPane1
- Variable in class org.agmodel.bioinfo.antmapgui.
AboutGplDialog
jScrollPane1
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jScrollPane2
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jScrollPane3
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jScrollPane4
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jSplitPane1
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jTabbedPane1
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jTextArea1
- Variable in class org.agmodel.bioinfo.antmapgui.
AboutGplDialog
jTextArea1
- Variable in class org.agmodel.bioinfo.antmapgui.
FontChooser
jTextArea_data
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
jTextField
- Variable in class org.agmodel.bioinfo.antmapgui.
DblParamPanel
jTextField
- Variable in class org.agmodel.bioinfo.antmapgui.
IntParamPanel
jbInit()
- Method in class org.agmodel.bioinfo.antmapgui.
ComboBoxPanel
jbInit()
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionPanel
jbInit()
- Method in class org.agmodel.bioinfo.antmapgui.
FontChooserPanel
L
LDMatrixFactory
- class org.agmodel.bioinfo.antmap.
LDMatrixFactory
.
LDMatrixFactory()
- Constructor for class org.agmodel.bioinfo.antmap.
LDMatrixFactory
LGFactory
- class org.agmodel.bioinfo.antmap.
LGFactory
.
LGFactory()
- Constructor for class org.agmodel.bioinfo.antmap.
LGFactory
LeqDMatrixFactory
- class org.agmodel.bioinfo.antmap.
LeqDMatrixFactory
.
LeqDMatrixFactory()
- Constructor for class org.agmodel.bioinfo.antmap.
LeqDMatrixFactory
LinkageAnalyzer
- class org.agmodel.bioinfo.antmap.
LinkageAnalyzer
.
LinkageAnalyzer(SegDataBean)
- Constructor for class org.agmodel.bioinfo.antmap.
LinkageAnalyzer
コンストラクタ
linkageGrouping(GroupingOptionBean)
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapEngine
loadAcoParamsBean(String)
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsReader
loadData(String)
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapEngine
locusOrdering(OrderingOptionBean, AcoParamsBean)
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapEngine
log
- Variable in class org.agmodel.bioinfo.antmapgui.
AntColonyOrdering
log
- Variable in class org.agmodel.bioinfo.antmapgui.
AntMapEngine
log
- Variable in class org.agmodel.bioinfo.antmapgui.
BootstrapTest
M
MAX_DIST
- Static variable in class org.agmodel.bioinfo.segregation.
MapFunction
MAX_HEIGHT
- Static variable in class org.agmodel.bioinfo.antmapgui.
DrawMapPanel
MAX_WIDTH
- Static variable in class org.agmodel.bioinfo.antmapgui.
DrawMapPanel
ME_ALL
- Static variable in class org.agmodel.bioinfo.antmap.
LGFactory
ME_ALL_NAME
- Static variable in class org.agmodel.bioinfo.antmap.
LGFactory
ME_NNL
- Static variable in class org.agmodel.bioinfo.antmap.
LGFactory
ME_NNL_NAME
- Static variable in class org.agmodel.bioinfo.antmap.
LGFactory
MF_HALDANE
- Static variable in class org.agmodel.bioinfo.segregation.
MapFunction
MF_HALDANE_NAME
- Static variable in class org.agmodel.bioinfo.segregation.
MapFunction
MF_KOSAMBI
- Static variable in class org.agmodel.bioinfo.segregation.
MapFunction
MF_KOSAMBI_NAME
- Static variable in class org.agmodel.bioinfo.segregation.
MapFunction
MINIMUM
- Variable in class org.agmodel.bioinfo.antmap.
EMatrixFactory
MT_CODOM
- Static variable in class org.agmodel.bioinfo.segregation.
MarkerType
MT_DOM_P1
- Static variable in class org.agmodel.bioinfo.segregation.
MarkerType
MT_DOM_P2
- Static variable in class org.agmodel.bioinfo.segregation.
MarkerType
MT_NA
- Static variable in class org.agmodel.bioinfo.segregation.
MarkerType
MainFrame
- class org.agmodel.bioinfo.antmapgui.
MainFrame
.
Main frame of AntMap
MainFrame()
- Constructor for class org.agmodel.bioinfo.antmapgui.
MainFrame
MainFrame_jMenuItem_Anal_Boot_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Boot_actionAdapter
.
MainFrame_jMenuItem_Anal_Boot_actionAdapter(MainFrame)
- Constructor for class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Boot_actionAdapter
MainFrame_jMenuItem_Anal_Full_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Full_actionAdapter
.
MainFrame_jMenuItem_Anal_Full_actionAdapter(MainFrame)
- Constructor for class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Full_actionAdapter
MainFrame_jMenuItem_Anal_Group_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Group_actionAdapter
.
MainFrame_jMenuItem_Anal_Group_actionAdapter(MainFrame)
- Constructor for class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Group_actionAdapter
MainFrame_jMenuItem_Anal_Order_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Order_actionAdapter
.
MainFrame_jMenuItem_Anal_Order_actionAdapter(MainFrame)
- Constructor for class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Order_actionAdapter
MainFrame_jMenuItem_Anal_Redraw_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Redraw_actionAdapter
.
MainFrame_jMenuItem_Anal_Redraw_actionAdapter(MainFrame)
- Constructor for class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Redraw_actionAdapter
MainFrame_jMenuItem_Anal_Seg_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Seg_actionAdapter
.
MainFrame_jMenuItem_Anal_Seg_actionAdapter(MainFrame)
- Constructor for class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Anal_Seg_actionAdapter
MainFrame_jMenuItem_File_Exit_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_File_Exit_actionAdapter
.
MainFrame_jMenuItem_File_Exit_actionAdapter(MainFrame)
- Constructor for class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_File_Exit_actionAdapter
MainFrame_jMenuItem_File_Open_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_File_Open_actionAdapter
.
MainFrame_jMenuItem_File_Open_actionAdapter(MainFrame)
- Constructor for class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_File_Open_actionAdapter
MainFrame_jMenuItem_Help_About_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Help_About_actionAdapter
.
MainFrame_jMenuItem_Help_About_actionAdapter(MainFrame)
- Constructor for class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Help_About_actionAdapter
MainFrame_jMenuItem_Help_Gpl_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Help_Gpl_actionAdapter
.
MainFrame_jMenuItem_Help_Gpl_actionAdapter(MainFrame)
- Constructor for class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Help_Gpl_actionAdapter
MainFrame_jMenuItem_Save_Log_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Save_Log_actionAdapter
.
MainFrame_jMenuItem_Save_Log_actionAdapter(MainFrame)
- Constructor for class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Save_Log_actionAdapter
MainFrame_jMenuItem_Save_Map_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Save_Map_actionAdapter
.
MainFrame_jMenuItem_Save_Map_actionAdapter(MainFrame)
- Constructor for class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Save_Map_actionAdapter
MainFrame_jMenuItem_Save_Result_actionAdapter
- class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Save_Result_actionAdapter
.
MainFrame_jMenuItem_Save_Result_actionAdapter(MainFrame)
- Constructor for class org.agmodel.bioinfo.antmapgui.
MainFrame_jMenuItem_Save_Result_actionAdapter
MapData
- class org.agmodel.bioinfo.antmap.
MapData
.
MapData()
- Constructor for class org.agmodel.bioinfo.antmap.
MapData
MapData(int)
- Constructor for class org.agmodel.bioinfo.antmap.
MapData
MapData(int[], int[], String[], double[][])
- Constructor for class org.agmodel.bioinfo.antmap.
MapData
MapFunction
- class org.agmodel.bioinfo.segregation.
MapFunction
.
MapFunction()
- Constructor for class org.agmodel.bioinfo.segregation.
MapFunction
MapFunction(int)
- Constructor for class org.agmodel.bioinfo.segregation.
MapFunction
Marker
- class org.agmodel.bioinfo.segregation.
Marker
.
Marker()
- Constructor for class org.agmodel.bioinfo.segregation.
Marker
Marker(String)
- Constructor for class org.agmodel.bioinfo.segregation.
Marker
Marker(int)
- Constructor for class org.agmodel.bioinfo.segregation.
Marker
Marker(String, int)
- Constructor for class org.agmodel.bioinfo.segregation.
Marker
MarkerBean
- class org.agmodel.bioinfo.antmap.
MarkerBean
.
MarkerBean()
- Constructor for class org.agmodel.bioinfo.antmap.
MarkerBean
MarkerType
- class org.agmodel.bioinfo.segregation.
MarkerType
.
MarkerType()
- Constructor for class org.agmodel.bioinfo.segregation.
MarkerType
MarkerTypeGetter
- class org.agmodel.bioinfo.segregation.
MarkerTypeGetter
.
MarkerTypeGetter()
- Constructor for class org.agmodel.bioinfo.segregation.
MarkerTypeGetter
MersenneTwister
- class org.agmodel.bioinfo.stat.
MersenneTwister
.
MersenneTwister()
- Constructor for class org.agmodel.bioinfo.stat.
MersenneTwister
引数なしのコンストラクタ 時間がシードになる
MersenneTwister(long)
- Constructor for class org.agmodel.bioinfo.stat.
MersenneTwister
long型のシードを設定するコンストラクタ
MersenneTwister(int[])
- Constructor for class org.agmodel.bioinfo.stat.
MersenneTwister
int型のシードを設定するコンストラクタ
MyFileFilter
- class org.agmodel.bioinfo.antmapgui.
MyFileFilter
.
タイトル:
MyFileFilter(String, String)
- Constructor for class org.agmodel.bioinfo.antmapgui.
MyFileFilter
MyTextArea
- class org.agmodel.bioinfo.antmapgui.
MyTextArea
.
タイトル:
MyTextArea()
- Constructor for class org.agmodel.bioinfo.antmapgui.
MyTextArea
main(String[])
- Static method in class org.agmodel.bioinfo.antmapgui.
AntMap
map
- Variable in class org.agmodel.bioinfo.antmapgui.
AntColonyOrdering
map
- Variable in class org.agmodel.bioinfo.antmapgui.
AntMapEngine
map
- Variable in class org.agmodel.bioinfo.antmapgui.
BootstrapTest
mapData
- Variable in class org.agmodel.bioinfo.antmapgui.
AntColonyOrdering
mapData
- Variable in class org.agmodel.bioinfo.antmapgui.
AntMapEngine
mapData
- Variable in class org.agmodel.bioinfo.antmapgui.
BootstrapTest
move(double[][])
- Method in class org.agmodel.bioinfo.antmap.
Ant
Move to the next stop
myTextArea_log
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
myTextArea_result
- Variable in class org.agmodel.bioinfo.antmapgui.
MainFrame
N
NMatrixFactory
- class org.agmodel.bioinfo.antmap.
NMatrixFactory
.
NMatrixFactory()
- Constructor for class org.agmodel.bioinfo.antmap.
NMatrixFactory
NormalDist
- class org.agmodel.bioinfo.stat.
NormalDist
.
NormalDist()
- Constructor for class org.agmodel.bioinfo.stat.
NormalDist
n_ant
- Variable in class org.agmodel.bioinfo.antmap.
AntColony
next(int)
- Method in class org.agmodel.bioinfo.stat.
MersenneTwister
O
OC_LL
- Static variable in class org.agmodel.bioinfo.antmap.
OrderingCriterion
OC_LL_NAME
- Static variable in class org.agmodel.bioinfo.antmap.
OrderingCriterion
OC_SARF
- Static variable in class org.agmodel.bioinfo.antmap.
OrderingCriterion
OC_SARF_NAME
- Static variable in class org.agmodel.bioinfo.antmap.
OrderingCriterion
OrderAligner
- class org.agmodel.bioinfo.antmap.
OrderAligner
.
OrderAligner()
- Constructor for class org.agmodel.bioinfo.antmap.
OrderAligner
OrderingCriterion
- class org.agmodel.bioinfo.antmap.
OrderingCriterion
.
OrderingCriterion()
- Constructor for class org.agmodel.bioinfo.antmap.
OrderingCriterion
OrderingOptionBean
- class org.agmodel.bioinfo.antmap.
OrderingOptionBean
.
OrderingOptionBean()
- Constructor for class org.agmodel.bioinfo.antmap.
OrderingOptionBean
OrderingOptionPanel
- class org.agmodel.bioinfo.antmapgui.
OrderingOptionPanel
.
タイトル:
OrderingOptionPanel()
- Constructor for class org.agmodel.bioinfo.antmapgui.
OrderingOptionPanel
of(double)
- Method in interface org.agmodel.bioinfo.common.
BisectionBean.Function
of(double)
- Method in class org.agmodel.bioinfo.segregation.
Sr_CC
of(double)
- Method in class org.agmodel.bioinfo.segregation.
Sr_CD
of(double)
- Method in class org.agmodel.bioinfo.segregation.
Sr_DD_Cup
of(double)
- Method in class org.agmodel.bioinfo.segregation.
Sr_DD_Rep
orderingOptionBean
- Variable in class org.agmodel.bioinfo.antmapgui.
AntColonyOrdering
orderingOptionBean
- Variable in class org.agmodel.bioinfo.antmapgui.
BootstrapTest
orderingOptionPanel
- Variable in class org.agmodel.bioinfo.antmapgui.
AntMapOptionPanel
org.agmodel.bioinfo.antmap
- package org.agmodel.bioinfo.antmap
org.agmodel.bioinfo.antmapgui
- package org.agmodel.bioinfo.antmapgui
org.agmodel.bioinfo.common
- package org.agmodel.bioinfo.common
このパッケージについての1文の概要説明で始めてください。 続けて説明の残りの部分を記述してください。
org.agmodel.bioinfo.segregation
- package org.agmodel.bioinfo.segregation
このパッケージについての1文の概要説明で始めてください。 続けて説明の残りの部分を記述してください。
org.agmodel.bioinfo.stat
- package org.agmodel.bioinfo.stat
P
PartialExtractor
- class org.agmodel.bioinfo.antmap.
PartialExtractor
.
PartialExtractor()
- Constructor for class org.agmodel.bioinfo.antmap.
PartialExtractor
packFrame
- Variable in class org.agmodel.bioinfo.antmapgui.
AntMap
paintComponent(Graphics)
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapPanel
panel1
- Variable in class org.agmodel.bioinfo.antmapgui.
FontChooser
prepareForJourney()
- Method in class org.agmodel.bioinfo.antmap.
Ant
Prepare for a journey
(Initialize flags for visited cities)
processWindowEvent(WindowEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
MainFrame
progress
- Variable in class org.agmodel.bioinfo.antmapgui.
AntColonyOrdering
progress
- Variable in class org.agmodel.bioinfo.antmapgui.
AntMapEngine
progress
- Variable in class org.agmodel.bioinfo.antmapgui.
BootstrapTest
R
RMatrixFactory
- class org.agmodel.bioinfo.antmap.
RMatrixFactory
.
RMatrixFactory()
- Constructor for class org.agmodel.bioinfo.antmap.
RMatrixFactory
RadioButtonPanel
- class org.agmodel.bioinfo.antmapgui.
RadioButtonPanel
.
タイトル:
RadioButtonPanel()
- Constructor for class org.agmodel.bioinfo.antmapgui.
RadioButtonPanel
RadioButtonPanel(String)
- Constructor for class org.agmodel.bioinfo.antmapgui.
RadioButtonPanel
RadioButtonPanel(String, String[])
- Constructor for class org.agmodel.bioinfo.antmapgui.
RadioButtonPanel
RecombinationBean
- class org.agmodel.bioinfo.segregation.
RecombinationBean
.
RecombinationBean()
- Constructor for class org.agmodel.bioinfo.segregation.
RecombinationBean
rbpBootstrapProb
- Variable in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionPanel
rbpCriterion
- Variable in class org.agmodel.bioinfo.antmapgui.
OrderingOptionPanel
rbpMapFunction
- Variable in class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel
rbpMapFunction
- Variable in class org.agmodel.bioinfo.antmapgui.
OrderingOptionPanel
rbpMethod
- Variable in class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel
redrawMap()
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapEngine
removeAllItems()
- Method in class org.agmodel.bioinfo.antmapgui.
ComboBoxPanel
removeItemAt(int)
- Method in class org.agmodel.bioinfo.antmapgui.
ComboBoxPanel
result
- Variable in class org.agmodel.bioinfo.antmapgui.
AntColonyOrdering
result
- Variable in class org.agmodel.bioinfo.antmapgui.
AntMapEngine
result
- Variable in class org.agmodel.bioinfo.antmapgui.
BootstrapTest
run()
- Method in class org.agmodel.bioinfo.antmapgui.
AntColonyOrdering
run()
- Method in class org.agmodel.bioinfo.antmapgui.
BootstrapTest
S
ST_BC
- Static variable in class org.agmodel.bioinfo.segregation.
SegType
ST_DH
- Static variable in class org.agmodel.bioinfo.segregation.
SegType
ST_F2
- Static variable in class org.agmodel.bioinfo.segregation.
SegType
ST_NA
- Static variable in class org.agmodel.bioinfo.segregation.
SegType
ST_RIL
- Static variable in class org.agmodel.bioinfo.segregation.
SegType
SegDataBean
- class org.agmodel.bioinfo.antmap.
SegDataBean
.
SegDataBean()
- Constructor for class org.agmodel.bioinfo.antmap.
SegDataBean
引数なしのコンストラクタ
SegDataBean(int, String[], char[][])
- Constructor for class org.agmodel.bioinfo.antmap.
SegDataBean
引数つきのコンストラクタ
SegDataFactory
- class org.agmodel.bioinfo.segregation.
SegDataFactory
.
SegDataFactory()
- Constructor for class org.agmodel.bioinfo.segregation.
SegDataFactory
SegDataReader
- class org.agmodel.bioinfo.antmap.
SegDataReader
.
SegDataReader(File)
- Constructor for class org.agmodel.bioinfo.antmap.
SegDataReader
SegDataReader(String)
- Constructor for class org.agmodel.bioinfo.antmap.
SegDataReader
SegDataVerifier
- class org.agmodel.bioinfo.antmap.
SegDataVerifier
.
SegDataVerifier()
- Constructor for class org.agmodel.bioinfo.antmap.
SegDataVerifier
SegRatioBean
- class org.agmodel.bioinfo.segregation.
SegRatioBean
.
SegRatioBean()
- Constructor for class org.agmodel.bioinfo.segregation.
SegRatioBean
Constructor
SegRatioTest
- class org.agmodel.bioinfo.segregation.
SegRatioTest
.
SegRatioTest()
- Constructor for class org.agmodel.bioinfo.segregation.
SegRatioTest
SegRatioTester
- class org.agmodel.bioinfo.antmap.
SegRatioTester
.
SegRatioTester()
- Constructor for class org.agmodel.bioinfo.antmap.
SegRatioTester
SegType
- class org.agmodel.bioinfo.segregation.
SegType
.
SegType()
- Constructor for class org.agmodel.bioinfo.segregation.
SegType
Sr_CC
- class org.agmodel.bioinfo.segregation.
Sr_CC
.
Sr_CC(int[])
- Constructor for class org.agmodel.bioinfo.segregation.
Sr_CC
Sr_CD
- class org.agmodel.bioinfo.segregation.
Sr_CD
.
Sr_CD(int[])
- Constructor for class org.agmodel.bioinfo.segregation.
Sr_CD
Sr_DD_Cup
- class org.agmodel.bioinfo.segregation.
Sr_DD_Cup
.
Sr_DD_Cup(int[])
- Constructor for class org.agmodel.bioinfo.segregation.
Sr_DD_Cup
Sr_DD_Rep
- class org.agmodel.bioinfo.segregation.
Sr_DD_Rep
.
Sr_DD_Rep(int[])
- Constructor for class org.agmodel.bioinfo.segregation.
Sr_DD_Rep
StringFormat
- class org.agmodel.bioinfo.common.
StringFormat
.
StringFormat()
- Constructor for class org.agmodel.bioinfo.common.
StringFormat
saveAcoParamsBean(String, AcoParamsBean)
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsWriter
saveImage(File, float)
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapPanel
saveText(File)
- Method in class org.agmodel.bioinfo.antmapgui.
MyTextArea
secretePheromone(double[][])
- Method in class org.agmodel.bioinfo.antmap.
Ant
Secrete pheromone on the tau matrix
segDataBean
- Variable in class org.agmodel.bioinfo.antmapgui.
AntColonyOrdering
segDataBean
- Variable in class org.agmodel.bioinfo.antmapgui.
AntMapEngine
segDataBean
- Variable in class org.agmodel.bioinfo.antmapgui.
BootstrapTest
setAcoParams(AcoParamsBean)
- Method in class org.agmodel.bioinfo.antmap.
AcoMapFactory
setAcoParamsBean(AcoParamsBean)
- Method in class org.agmodel.bioinfo.antmapgui.
AcoParamsPanel
setAcoParamsBean(AcoParamsBean)
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapOptionPanel
setAlpha(double)
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsBean
set alpha
setBeta(double)
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsBean
set beta
setBootProb(double)
- Method in class org.agmodel.bioinfo.antmap.
MarkerBean
setChi2(double)
- Method in class org.agmodel.bioinfo.segregation.
RecombinationBean
setChiSqr(double)
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
setCriterion(int)
- Method in class org.agmodel.bioinfo.antmap.
GroupingOptionBean
setCriterion(int)
- Method in class org.agmodel.bioinfo.antmap.
OrderingOptionBean
setCriterion(int)
- Method in class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel
setDefaultFont(Font)
- Method in class org.agmodel.bioinfo.antmapgui.
FontChooser
setDrawMapOptionBean(DrawMapOptionBean)
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapOptionPanel
setDrawMapOptionBean(DrawMapOptionBean)
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionPanel
setDrawMapOptionBean(DrawMapOptionBean)
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapPanel
setEnabled(boolean)
- Method in class org.agmodel.bioinfo.antmapgui.
RadioButtonPanel
setError(boolean)
- Method in class org.agmodel.bioinfo.segregation.
RecombinationBean
setFontGroupName(Font)
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionBean
setFontMarkerInfo(Font)
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionBean
setFunction(int)
- Method in class org.agmodel.bioinfo.segregation.
MapFunction
setGenotype(char[])
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
setGenotypeData(char[][])
- Method in class org.agmodel.bioinfo.antmap.
SegDataBean
set segregation data
setGroupIndex(int)
- Method in class org.agmodel.bioinfo.antmap.
OrderingOptionBean
setGroupNames(String[])
- Method in class org.agmodel.bioinfo.antmapgui.
OrderingOptionPanel
setGroupingOptionBean(GroupingOptionBean)
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapOptionPanel
setGroupingOptionBean(GroupingOptionBean)
- Method in class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel
setInService(boolean)
- Method in class org.agmodel.bioinfo.antmapgui.
ThreadIndicator
setIndex(int)
- Method in class org.agmodel.bioinfo.antmap.
MarkerBean
setInit_tau(double)
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsBean
set init_tau
setLocation(double)
- Method in class org.agmodel.bioinfo.antmap.
MarkerBean
setLocation(double)
- Method in class org.agmodel.bioinfo.segregation.
Marker
setLod(double)
- Method in class org.agmodel.bioinfo.segregation.
RecombinationBean
setMapFunction(int)
- Method in class org.agmodel.bioinfo.antmap.
GroupingOptionBean
setMapFunction(int)
- Method in class org.agmodel.bioinfo.antmap.
LGFactory
setMapFunction(int)
- Method in class org.agmodel.bioinfo.antmap.
MapData
setMapFunction(int)
- Method in class org.agmodel.bioinfo.antmap.
OrderingOptionBean
setMapSpacing(int)
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionBean
setMarginSize(int)
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionBean
setMarkerBootProb(int, double)
- Method in class org.agmodel.bioinfo.antmap.
MapData
setMarkerName(String[])
- Method in class org.agmodel.bioinfo.antmap.
SegDataBean
setMarkerType(int[])
- Method in class org.agmodel.bioinfo.antmap.
SegDataBean
setMarkerType(int)
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
setMarkers(int[], int[], String[], double[][])
- Method in class org.agmodel.bioinfo.antmap.
MapData
setMaxIteration(int)
- Method in class org.agmodel.bioinfo.antmap.
OrderingOptionBean
setMethod(int)
- Method in class org.agmodel.bioinfo.antmap.
GroupingOptionBean
setMinNMarker(int)
- Method in class org.agmodel.bioinfo.antmap.
GroupingOptionBean
setN(int)
- Method in class org.agmodel.bioinfo.segregation.
RecombinationBean
setNBootstrap(int)
- Method in class org.agmodel.bioinfo.antmap.
OrderingOptionBean
setNConfirm(int)
- Method in class org.agmodel.bioinfo.antmap.
OrderingOptionBean
setN_ant(int)
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsBean
set n_ant (number of ants)
setN_data(int)
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
setN_exp(double[])
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
setN_iteration(int)
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsBean
set n_replicate (number of replicates)
setN_miss(int)
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
setN_obs(int[])
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
setName(String)
- Method in class org.agmodel.bioinfo.antmap.
MapData
setName(String)
- Method in class org.agmodel.bioinfo.antmap.
MarkerBean
setName(String)
- Method in class org.agmodel.bioinfo.segregation.
Marker
setOrderingGroupNames(String[])
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapOptionPanel
setOrderingOptionBean(OrderingOptionBean)
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapOptionPanel
setOrderingOptionBean(OrderingOptionBean)
- Method in class org.agmodel.bioinfo.antmapgui.
OrderingOptionPanel
setP(double)
- Method in class org.agmodel.bioinfo.segregation.
RecombinationBean
setP(double)
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
setP_fancy(double)
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsBean
set p_fancy (probability of fancy choice)
setPanelSize(int, int)
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapPanel
setQ(double)
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsBean
set q
setRange(int)
- Method in class org.agmodel.bioinfo.antmapgui.
DblParamPanel
setRange(int)
- Method in class org.agmodel.bioinfo.antmapgui.
IntParamPanel
setRho(double)
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsBean
set rho
setScaleFactor(double)
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionBean
setSeed(long)
- Method in class org.agmodel.bioinfo.antmap.
AntColonyJNI
setSeed(long)
- Method in class org.agmodel.bioinfo.stat.
MersenneTwister
long型のシードの設定
setSeed(int[])
- Method in class org.agmodel.bioinfo.stat.
MersenneTwister
setSegDataBean(SegDataBean)
- Method in class org.agmodel.bioinfo.antmap.
LinkageAnalyzer
SegDataBeanのセッター
setSegType(int)
- Method in class org.agmodel.bioinfo.antmap.
SegDataBean
set segregation type
setSegType(int)
- Method in class org.agmodel.bioinfo.segregation.
SegRatioBean
setSelectedFont(Font)
- Method in class org.agmodel.bioinfo.antmapgui.
FontChooserPanel
setSelectedIndex(int)
- Method in class org.agmodel.bioinfo.antmapgui.
ComboBoxPanel
setSelectedIndex(int)
- Method in class org.agmodel.bioinfo.antmapgui.
RadioButtonPanel
setSelectedItem(Object)
- Method in class org.agmodel.bioinfo.antmapgui.
ComboBoxPanel
setShowBootstrapValue(boolean)
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionBean
setShowBootstrapValue(boolean)
- Method in class org.agmodel.bioinfo.antmapgui.
DrawMapOptionPanel
setStatusLabel(JLabel)
- Method in class org.agmodel.bioinfo.antmapgui.
ThreadIndicator
setText(String)
- Method in class org.agmodel.bioinfo.antmapgui.
ComboBoxPanel
setText(String)
- Method in class org.agmodel.bioinfo.antmapgui.
DblParamPanel
setText(String)
- Method in class org.agmodel.bioinfo.antmapgui.
FontChooserPanel
setText(String)
- Method in class org.agmodel.bioinfo.antmapgui.
IntParamPanel
setText(String)
- Method in class org.agmodel.bioinfo.antmapgui.
RadioButtonPanel
setThreshold(double)
- Method in class org.agmodel.bioinfo.antmap.
GroupingOptionBean
setTourLength(double)
- Method in class org.agmodel.bioinfo.antmap.
Ant
Set tour length
setTourLength(double)
- Method in class org.agmodel.bioinfo.antmap.
TourBean
setTourOrder(int[])
- Method in class org.agmodel.bioinfo.antmap.
TourBean
setType(int)
- Method in class org.agmodel.bioinfo.segregation.
Marker
setValue(double)
- Method in class org.agmodel.bioinfo.antmapgui.
DblParamPanel
setValue(int)
- Method in class org.agmodel.bioinfo.antmapgui.
IntParamPanel
setValue(double)
- Method in class org.agmodel.bioinfo.segregation.
RecombinationBean
setWeight(double)
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsBean
show()
- Method in class org.agmodel.bioinfo.antmap.
AcoParamsBean
show()
- Method in class org.agmodel.bioinfo.antmap.
MapData
show()
- Method in class org.agmodel.bioinfo.antmap.
TourBean
標準出力への内容の表示
show(PrintStream)
- Method in class org.agmodel.bioinfo.antmap.
TourBean
show()
- Method in class org.agmodel.bioinfo.segregation.
Chromosome
showBootProb()
- Method in class org.agmodel.bioinfo.antmap.
MapData
showDialog(Component)
- Method in class org.agmodel.bioinfo.antmapgui.
AboutGplDialog
showDialog(Component)
- Method in class org.agmodel.bioinfo.antmapgui.
FontChooser
showGamete()
- Method in class org.agmodel.bioinfo.segregation.
Chromosome
showLocation()
- Method in class org.agmodel.bioinfo.antmap.
MapData
showOrder()
- Method in class org.agmodel.bioinfo.antmap.
TourBean
showOrder(PrintStream)
- Method in class org.agmodel.bioinfo.antmap.
TourBean
showPhenotype(int, double)
- Method in class org.agmodel.bioinfo.segregation.
Chromosome
showPhenotype(int)
- Method in class org.agmodel.bioinfo.segregation.
Chromosome
showZygote(int)
- Method in class org.agmodel.bioinfo.segregation.
Chromosome
solve(BisectionBean.Function, double, double, double)
- Static method in class org.agmodel.bioinfo.common.
BisectionBean
stateChanged(ChangeEvent)
- Method in class org.agmodel.bioinfo.antmapgui.
GroupingOptionPanel_jRadioButtonDist_changeAdapter
status
- Variable in class org.agmodel.bioinfo.antmapgui.
AntMapEngine
status
- Variable in class org.agmodel.bioinfo.antmapgui.
ThreadIndicator
T
ThreadIndicator
- class org.agmodel.bioinfo.antmapgui.
ThreadIndicator
.
タイトル:
ThreadIndicator()
- Constructor for class org.agmodel.bioinfo.antmapgui.
ThreadIndicator
TourBean
- class org.agmodel.bioinfo.antmap.
TourBean
.
TourBean()
- Constructor for class org.agmodel.bioinfo.antmap.
TourBean
引数なしのコンストラクタ tourOrderは、int[1]でnewされる
TourBean(double, int[])
- Constructor for class org.agmodel.bioinfo.antmap.
TourBean
引数つきのコンストラクタ
TwoPointAnalysis
- class org.agmodel.bioinfo.segregation.
TwoPointAnalysis
.
TwoPointAnalysis()
- Constructor for class org.agmodel.bioinfo.segregation.
TwoPointAnalysis
test(int, char[])
- Method in class org.agmodel.bioinfo.segregation.
SegRatioTest
test under normal segregation in segType generation
testAllLoci(SegDataBean)
- Method in class org.agmodel.bioinfo.antmap.
SegRatioTester
testBC(char[])
- Method in class org.agmodel.bioinfo.segregation.
SegRatioTest
test under normal segregation in BC generation
testDH(char[])
- Method in class org.agmodel.bioinfo.segregation.
SegRatioTest
test under normal segregation in DH generation
testF2(char[])
- Method in class org.agmodel.bioinfo.segregation.
SegRatioTest
get probability under normal segregation in F2 generation
testOrder(SegDataBean, MapData, int, int, int)
- Method in class org.agmodel.bioinfo.antmap.
BootStrapTester
testRIL(char[])
- Method in class org.agmodel.bioinfo.segregation.
SegRatioTest
get probability under normal segregation in RIL infinite generation
testSegregation()
- Method in class org.agmodel.bioinfo.antmapgui.
AntMapEngine
text
- Variable in class org.agmodel.bioinfo.antmapgui.
RadioButtonPanel
threadIndicator
- Variable in class org.agmodel.bioinfo.antmapgui.
AntColonyOrdering
threadIndicator
- Variable in class org.agmodel.bioinfo.antmapgui.
AntMapEngine
threadIndicator
- Variable in class org.agmodel.bioinfo.antmapgui.
BootstrapTest
tpa
- Variable in class org.agmodel.bioinfo.antmap.
RMatrixFactory
V
VR_ALL
- Static variable in class org.agmodel.bioinfo.antmapgui.
DblParamPanel
VR_ALL
- Static variable in class org.agmodel.bioinfo.antmapgui.
IntParamPanel
VR_NEGATIVE
- Static variable in class org.agmodel.bioinfo.antmapgui.
DblParamPanel
VR_NEGATIVE
- Static variable in class org.agmodel.bioinfo.antmapgui.
IntParamPanel
VR_NEGATIVE_AND_ZERO
- Static variable in class org.agmodel.bioinfo.antmapgui.
DblParamPanel
VR_NEGATIVE_AND_ZERO
- Static variable in class org.agmodel.bioinfo.antmapgui.
IntParamPanel
VR_POSITIVE
- Static variable in class org.agmodel.bioinfo.antmapgui.
DblParamPanel
VR_POSITIVE
- Static variable in class org.agmodel.bioinfo.antmapgui.
IntParamPanel
VR_POSITIVE_AND_ZERO
- Static variable in class org.agmodel.bioinfo.antmapgui.
DblParamPanel
VR_POSITIVE_AND_ZERO
- Static variable in class org.agmodel.bioinfo.antmapgui.
IntParamPanel
verify(SegDataBean)
- Method in class org.agmodel.bioinfo.antmap.
SegDataVerifier
A
B
C
D
E
F
G
I
J
L
M
N
O
P
R
S
T
V
Overview
Package
Class
Tree
Deprecated
Index
Help
PREV NEXT
FRAMES
NO FRAMES
All Classes