org.agmodel.bioinfo.antmapgui
Class AntMapEngine
java.lang.Object
org.agmodel.bioinfo.antmapgui.AntMapEngine
- public class AntMapEngine
- extends java.lang.Object
A main engine for calculation in AntMap
Title: AntMap
Explanation: Linkage mapping software based on ACO algorithm
Copyright: Copyright (c) 2004 NARO
Company name: NARO
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
segDataBean
SegDataBean segDataBean
groupExtractor
GroupExtractor groupExtractor
mapData
MapData[] mapData
log
javax.swing.JTextArea log
result
javax.swing.JTextArea result
map
DrawMapPanel map
progress
javax.swing.JProgressBar progress
status
javax.swing.JLabel status
threadIndicator
ThreadIndicator threadIndicator
AntMapEngine
public AntMapEngine(MainFrame mainFrame)
loadData
public void loadData(java.lang.String fileName)
throws java.lang.Exception
- Throws:
java.lang.Exception
testSegregation
public void testSegregation()
throws java.lang.Exception
- Throws:
java.lang.Exception
linkageGrouping
public int linkageGrouping(GroupingOptionBean groupingOptionBean)
throws java.lang.Exception
- Throws:
java.lang.Exception
locusOrdering
public void locusOrdering(OrderingOptionBean orderingOptionBean,
AcoParamsBean acoParamsBean)
throws java.lang.Exception
- Throws:
java.lang.Exception
bootstrapTest
public void bootstrapTest(OrderingOptionBean orderingOptionBean,
AcoParamsBean acoParamsBean)
throws java.lang.Exception
- Throws:
java.lang.Exception
redrawMap
public void redrawMap()
throws java.lang.Exception
- Throws:
java.lang.Exception