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java.lang.Objectorg.agmodel.bioinfo.segregation.TwoPointAnalysis
Constructor Summary | |
TwoPointAnalysis()
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Method Summary | |
double |
getR_BC(char[] l1,
char[] l2)
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double |
getR_DH(char[] l1,
char[] l2)
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double |
getR_F2(char[] l1,
char[] l2,
int markerType1,
int markerType2)
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double |
getR_RIL(char[] l1,
char[] l2)
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RecombinationBean |
getRecombinationBean_BC(char[] l1,
char[] l2)
Calculate recombination rate for backcross |
RecombinationBean |
getRecombinationBean_DH(char[] l1,
char[] l2)
Calculate recombination rate for doubled haploid |
RecombinationBean |
getRecombinationBean_F2(char[] l1,
char[] l2,
int markerType1,
int markerType2)
Calculate recombination rate for F2 |
RecombinationBean |
getRecombinationBean_RIL(char[] l1,
char[] l2)
Calculate recombination rate for recombinant inbred line |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
public TwoPointAnalysis()
Method Detail |
public double getR_BC(char[] l1, char[] l2)
public double getR_DH(char[] l1, char[] l2)
public double getR_RIL(char[] l1, char[] l2)
public double getR_F2(char[] l1, char[] l2, int markerType1, int markerType2)
public RecombinationBean getRecombinationBean_BC(char[] l1, char[] l2)
l1
- Array of genotypes for locus1
('A' (homozygote for the recurrent parent genotype),
'H' (heterozogote),
'-' (missing data))l2
- Array of genotypes for locus2 (Genotype description is the same as locus1)
public RecombinationBean getRecombinationBean_DH(char[] l1, char[] l2)
l1
- Array of genotypes for locus1
('A' (homozygote for parental genotype a),
'B' (homozygote for paretnal genotype b),
'-' (missing data))l2
- Array of gneotypes for locus2 (Genotype description is the same as locus1)
public RecombinationBean getRecombinationBean_RIL(char[] l1, char[] l2)
l1
- Array of genotypes for locus1
('A' (homozygote for parental genotype a),
'B' (homozygote for paretnal genotype b),
'-' (missing data))l2
- Array of gneotypes for locus2 (Genotype description is the same as locus1)
public RecombinationBean getRecombinationBean_F2(char[] l1, char[] l2, int markerType1, int markerType2)
l1
- Array of genotypes for locus1
('A' (homozygote for parental genotype a),
'B' (homozygote for paretnal genotype b),
'H' (heterozygote carrying both alleles a and b),
'C' (not a homozygote for allele a (either bb or ab genotype)),
'D' (not a homozygote for allele b (either aa or ab genotype)),
'-' (missing data))l2
- Array of gneotypes for locus2 (Genotype description is the same as locus1)
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