org.agmodel.bioinfo.antmapgui
Class AntColonyOrdering

java.lang.Object
  extended byjava.lang.Thread
      extended byorg.agmodel.bioinfo.antmapgui.AntColonyOrdering
All Implemented Interfaces:
java.lang.Runnable

public class AntColonyOrdering
extends java.lang.Thread

A thread class for ordering loci by ACO algorithm

Title: AntMap

Explanation: Linkage mapping software based on ACO algorithm

Copyright: Copyright (c) 2004 NARO

Company name: NARO


Field Summary
(package private)  AcoParamsBean acoParamsBean
           
(package private)  GroupExtractor groupExtractor
           
(package private)  javax.swing.JTextArea log
           
(package private)  DrawMapPanel map
           
(package private)  MapData[] mapData
           
(package private)  OrderingOptionBean orderingOptionBean
           
(package private)  javax.swing.JProgressBar progress
           
(package private)  javax.swing.JTextArea result
           
(package private)  SegDataBean segDataBean
           
(package private)  ThreadIndicator threadIndicator
           
 
Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY
 
Constructor Summary
AntColonyOrdering(javax.swing.JTextArea log, javax.swing.JTextArea result, DrawMapPanel map, javax.swing.JProgressBar progress, MapData[] mapData, SegDataBean segDataBean, GroupExtractor groupExtractor, OrderingOptionBean orderingOptionBean, AcoParamsBean acoParamsBean, ThreadIndicator threadIndicator)
           
 
Method Summary
 void run()
           
 
Methods inherited from class java.lang.Thread
activeCount, checkAccess, countStackFrames, currentThread, destroy, dumpStack, enumerate, getContextClassLoader, getName, getPriority, getThreadGroup, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setName, setPriority, sleep, sleep, start, stop, stop, suspend, toString, yield
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

log

javax.swing.JTextArea log

result

javax.swing.JTextArea result

map

DrawMapPanel map

progress

javax.swing.JProgressBar progress

mapData

MapData[] mapData

segDataBean

SegDataBean segDataBean

groupExtractor

GroupExtractor groupExtractor

orderingOptionBean

OrderingOptionBean orderingOptionBean

acoParamsBean

AcoParamsBean acoParamsBean

threadIndicator

ThreadIndicator threadIndicator
Constructor Detail

AntColonyOrdering

public AntColonyOrdering(javax.swing.JTextArea log,
                         javax.swing.JTextArea result,
                         DrawMapPanel map,
                         javax.swing.JProgressBar progress,
                         MapData[] mapData,
                         SegDataBean segDataBean,
                         GroupExtractor groupExtractor,
                         OrderingOptionBean orderingOptionBean,
                         AcoParamsBean acoParamsBean,
                         ThreadIndicator threadIndicator)
Method Detail

run

public void run()