org.agmodel.bioinfo.segregation
Class FisherInfoForRBean

java.lang.Object
  extended byorg.agmodel.bioinfo.segregation.FisherInfoForRBean
All Implemented Interfaces:
java.io.Serializable

public class FisherInfoForRBean
extends java.lang.Object
implements java.io.Serializable

See Also:
Serialized Form

Constructor Summary
FisherInfoForRBean()
          コンストラクタ
 
Method Summary
 double getFisherInfo_BC(double n, double r)
          Calculate Fisher's amount of information in BC generation
 double getFisherInfo_DH(double n, double r)
          Calculate Fisher's amount of information in DH generation
 double getFisherInfo_F2_CC(double n, double r)
          Calculate Fisher's amount of information between codominant markers in F2 generation
 double getFisherInfo_F2_CD(double n, double r)
          Calculate Fisher's amount of information between codominant and domiant markers in F2 generation
 double getFisherInfo_F2_DD_Cup(double n, double r)
          Calculate Fisher's amount of information between domiant markers in coupling phase in F2 generation
 double getFisherInfo_F2_DD_Rep(double n, double r)
          Calculate Fisher's amount of information between domiant markers in repulsion phase in F2 generation
 double getFisherInfo_RIL(double n, double r)
          Calculate Fisher's amount of information in RIL generation
 double getStd_BC(double n, double r)
          Calculate standard deviation of recombination rate in BC generation
 double getStd_DH(double n, double r)
          Calculate standard deviation of recombination rate in DH generation
 double getStd_F2_CC(double n, double r)
          Calculate standard deviation of recombination rate between codomiannt markers in F2 generation
 double getStd_F2_CD(double n, double r)
          Calculate standard deviation of recombination rate between codominant and dominant markers in F2 generation
 double getStd_F2_DD_Cup(double n, double r)
          Calculate standard deviation of recombination rate between dominant markers in couplihng phase in F2 generation
 double getStd_F2_DD_Rep(double n, double r)
          Calculate standard deviation of recombination rate between dominant markers in repulsion phase in F2 generation
 double getStd_RIL(double n, double r)
          Calculate standard deviation of recombination rate in RIL generation
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

FisherInfoForRBean

public FisherInfoForRBean()
コンストラクタ

Method Detail

getFisherInfo_F2_CC

public double getFisherInfo_F2_CC(double n,
                                  double r)
Calculate Fisher's amount of information between codominant markers in F2 generation

Parameters:
n - # of individuals
r - Recombination rate
Returns:
Fisher's amount of information

getStd_F2_CC

public double getStd_F2_CC(double n,
                           double r)
Calculate standard deviation of recombination rate between codomiannt markers in F2 generation

Parameters:
n - # of individuals
r - Recombination rate
Returns:
ST error of recombinatino rate

getFisherInfo_F2_CD

public double getFisherInfo_F2_CD(double n,
                                  double r)
Calculate Fisher's amount of information between codominant and domiant markers in F2 generation

Parameters:
n - # of individuals
r - Recombination rate
Returns:
Fisher's amount of information

getStd_F2_CD

public double getStd_F2_CD(double n,
                           double r)
Calculate standard deviation of recombination rate between codominant and dominant markers in F2 generation

Parameters:
n - # of individuals
r - Recombination rate
Returns:
ST error of recombinatino rate

getFisherInfo_F2_DD_Cup

public double getFisherInfo_F2_DD_Cup(double n,
                                      double r)
Calculate Fisher's amount of information between domiant markers in coupling phase in F2 generation

Parameters:
n - # of individuals
r - Recombination rate
Returns:
Fisher's amount of information

getStd_F2_DD_Cup

public double getStd_F2_DD_Cup(double n,
                               double r)
Calculate standard deviation of recombination rate between dominant markers in couplihng phase in F2 generation

Parameters:
n - # of individuals
r - Recombination rate
Returns:
ST error of recombinatino rate

getFisherInfo_F2_DD_Rep

public double getFisherInfo_F2_DD_Rep(double n,
                                      double r)
Calculate Fisher's amount of information between domiant markers in repulsion phase in F2 generation

Parameters:
n - # of individuals
r - Recombination rate
Returns:
Fisher's amount of information

getStd_F2_DD_Rep

public double getStd_F2_DD_Rep(double n,
                               double r)
Calculate standard deviation of recombination rate between dominant markers in repulsion phase in F2 generation

Parameters:
n - # of individuals
r - Recombination rate
Returns:
ST error of recombinatino rate

getFisherInfo_BC

public double getFisherInfo_BC(double n,
                               double r)
Calculate Fisher's amount of information in BC generation

Parameters:
n - # of individuals
r - Recombination rate
Returns:
Fisher's amount of information

getStd_BC

public double getStd_BC(double n,
                        double r)
Calculate standard deviation of recombination rate in BC generation

Parameters:
n - # of individuals
r - Recombination rate
Returns:
ST error of recombinatino rate

getFisherInfo_DH

public double getFisherInfo_DH(double n,
                               double r)
Calculate Fisher's amount of information in DH generation

Parameters:
n - # of individuals
r - Recombination rate
Returns:
Fisher's amount of information

getStd_DH

public double getStd_DH(double n,
                        double r)
Calculate standard deviation of recombination rate in DH generation

Parameters:
n - # of individuals
r - Recombination rate
Returns:
ST error of recombinatino rate

getFisherInfo_RIL

public double getFisherInfo_RIL(double n,
                                double r)
Calculate Fisher's amount of information in RIL generation

Parameters:
n - # of individuals
r - Recombination rate
Returns:
Fisher's amount of information

getStd_RIL

public double getStd_RIL(double n,
                         double r)
Calculate standard deviation of recombination rate in RIL generation

Parameters:
n - # of individuals
r - Recombination rate
Returns:
ST error of recombinatino rate