A B C D E F G I J L M N O P R S T V

A

ACOFactory - class org.agmodel.bioinfo.antmap.ACOFactory.
 
ACOFactory() - Constructor for class org.agmodel.bioinfo.antmap.ACOFactory
 
ACOOptionPanel_jButtonLoad_actionAdapter - class org.agmodel.bioinfo.antmapgui.ACOOptionPanel_jButtonLoad_actionAdapter.
 
ACOOptionPanel_jButtonLoad_actionAdapter(AcoParamsPanel) - Constructor for class org.agmodel.bioinfo.antmapgui.ACOOptionPanel_jButtonLoad_actionAdapter
 
ACOOptionPanel_jButtonSave_actionAdapter - class org.agmodel.bioinfo.antmapgui.ACOOptionPanel_jButtonSave_actionAdapter.
 
ACOOptionPanel_jButtonSave_actionAdapter(AcoParamsPanel) - Constructor for class org.agmodel.bioinfo.antmapgui.ACOOptionPanel_jButtonSave_actionAdapter
 
AboutGplDialog - class org.agmodel.bioinfo.antmapgui.AboutGplDialog.
 
AboutGplDialog() - Constructor for class org.agmodel.bioinfo.antmapgui.AboutGplDialog
AboutGplFrame
AboutGplFrame_jButton1_actionAdapter - class org.agmodel.bioinfo.antmapgui.AboutGplFrame_jButton1_actionAdapter.
 
AboutGplFrame_jButton1_actionAdapter(AboutGplDialog) - Constructor for class org.agmodel.bioinfo.antmapgui.AboutGplFrame_jButton1_actionAdapter
 
AcoMapFactory - class org.agmodel.bioinfo.antmap.AcoMapFactory.
 
AcoMapFactory(AcoParamsBean) - Constructor for class org.agmodel.bioinfo.antmap.AcoMapFactory
 
AcoParamsBean - class org.agmodel.bioinfo.antmap.AcoParamsBean.
 
AcoParamsBean() - Constructor for class org.agmodel.bioinfo.antmap.AcoParamsBean
コンストラクタ
AcoParamsPanel - class org.agmodel.bioinfo.antmapgui.AcoParamsPanel.
JPanel for setting ACO parameters
AcoParamsPanel() - Constructor for class org.agmodel.bioinfo.antmapgui.AcoParamsPanel
 
AcoParamsReader - class org.agmodel.bioinfo.antmap.AcoParamsReader.
 
AcoParamsReader() - Constructor for class org.agmodel.bioinfo.antmap.AcoParamsReader
 
AcoParamsWriter - class org.agmodel.bioinfo.antmap.AcoParamsWriter.
 
AcoParamsWriter() - Constructor for class org.agmodel.bioinfo.antmap.AcoParamsWriter
 
Ant - class org.agmodel.bioinfo.antmap.Ant.
 
Ant(AcoParamsBean, int, MersenneTwister) - Constructor for class org.agmodel.bioinfo.antmap.Ant
Construct an Ant object
AntColony - class org.agmodel.bioinfo.antmap.AntColony.
 
AntColony(AcoParamsBean, double[][]) - Constructor for class org.agmodel.bioinfo.antmap.AntColony
Construct an AntColony object (100% pure Java version of AntColony)
AntColony(AcoParamsBean, double[][], long) - Constructor for class org.agmodel.bioinfo.antmap.AntColony
Construct an AntColony object (100% pure Java version of AntColony)
AntColonyJNI - class org.agmodel.bioinfo.antmap.AntColonyJNI.
 
AntColonyJNI(AcoParamsBean, double[][]) - Constructor for class org.agmodel.bioinfo.antmap.AntColonyJNI
Construct an AntColonyJNI object (JNI version of AntColony)
AntColonyJNI(AcoParamsBean, double[][], long) - Constructor for class org.agmodel.bioinfo.antmap.AntColonyJNI
Construct an AntColony object (100% pure Java version of AntColony)
AntColonyOptimizer - interface org.agmodel.bioinfo.antmap.AntColonyOptimizer.
 
AntColonyOrdering - class org.agmodel.bioinfo.antmapgui.AntColonyOrdering.
A thread class for ordering loci by ACO algorithm
AntColonyOrdering(JTextArea, JTextArea, DrawMapPanel, JProgressBar, MapData[], SegDataBean, GroupExtractor, OrderingOptionBean, AcoParamsBean, ThreadIndicator) - Constructor for class org.agmodel.bioinfo.antmapgui.AntColonyOrdering
 
AntMap - class org.agmodel.bioinfo.antmapgui.AntMap.
タイトル:
AntMap() - Constructor for class org.agmodel.bioinfo.antmapgui.AntMap
 
AntMapEngine - class org.agmodel.bioinfo.antmapgui.AntMapEngine.
A main engine for calculation in AntMap
AntMapEngine(MainFrame) - Constructor for class org.agmodel.bioinfo.antmapgui.AntMapEngine
 
AntMapEngineException - exception org.agmodel.bioinfo.antmapgui.AntMapEngineException.
An exception class for AntMapEngine
AntMapEngineException(String) - Constructor for class org.agmodel.bioinfo.antmapgui.AntMapEngineException
 
AntMapInfo - class org.agmodel.bioinfo.antmapgui.AntMapInfo.
Information of AntMap software
AntMapInfo() - Constructor for class org.agmodel.bioinfo.antmapgui.AntMapInfo
 
AntMapOptionPanel - class org.agmodel.bioinfo.antmapgui.AntMapOptionPanel.
Panel for setting options of AntMap
AntMapOptionPanel() - Constructor for class org.agmodel.bioinfo.antmapgui.AntMapOptionPanel
 
accept(File) - Method in class org.agmodel.bioinfo.antmapgui.MyFileFilter
 
acoMapFactory - Variable in class org.agmodel.bioinfo.antmap.BootStrapTester
 
acoParamsBean - Variable in class org.agmodel.bioinfo.antmapgui.AntColonyOrdering
 
acoParamsBean - Variable in class org.agmodel.bioinfo.antmapgui.BootstrapTest
 
acoParamsPanel - Variable in class org.agmodel.bioinfo.antmapgui.AntMapOptionPanel
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.ACOOptionPanel_jButtonLoad_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.ACOOptionPanel_jButtonSave_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.AboutGplFrame_jButton1_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.DblParamPanel_jButtonAlter_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.FontChooserPanel_jButton_Setting_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.FontChooser_jButton_Applly_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.FontChooser_jButton_Cancel_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.FontChooser_jButton_Preview_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.GetIntParameterPanel_jButtonAlter_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Boot_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Full_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Group_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Order_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Redraw_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Seg_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_File_Exit_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_File_Open_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Help_About_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Help_Gpl_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Save_Log_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Save_Map_actionAdapter
 
actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Save_Result_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.ACOOptionPanel_jButtonLoad_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.ACOOptionPanel_jButtonSave_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.AboutGplFrame_jButton1_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.DblParamPanel_jButtonAlter_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.FontChooserPanel_jButton_Setting_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.FontChooser_jButton_Applly_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.FontChooser_jButton_Cancel_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.FontChooser_jButton_Preview_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.GetIntParameterPanel_jButtonAlter_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel_jRadioButtonDist_changeAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Boot_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Full_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Group_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Order_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Redraw_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Seg_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_File_Exit_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_File_Open_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Help_About_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Help_Gpl_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Save_Log_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Save_Map_actionAdapter
 
adaptee - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Save_Result_actionAdapter
 
addChromosome(Chromosome) - Method in class org.agmodel.bioinfo.segregation.SegDataFactory
 
addItem(Object) - Method in class org.agmodel.bioinfo.antmapgui.ComboBoxPanel
 
addItem(String) - Method in class org.agmodel.bioinfo.antmapgui.RadioButtonPanel
 
addItems(Object[]) - Method in class org.agmodel.bioinfo.antmapgui.ComboBoxPanel
 
addMarker(Marker, double) - Method in class org.agmodel.bioinfo.segregation.Chromosome
 
align(int[], double[][]) - Method in class org.agmodel.bioinfo.antmap.OrderAligner
 
alignMarkers() - Method in class org.agmodel.bioinfo.antmap.MapData
 
align_simple(int[]) - Method in class org.agmodel.bioinfo.antmap.OrderAligner
 
antMapEngine - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
antMapOptionPanel - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 

B

BisectionBean - class org.agmodel.bioinfo.common.BisectionBean.
 
BisectionBean() - Constructor for class org.agmodel.bioinfo.common.BisectionBean
 
BisectionBean.Function - interface org.agmodel.bioinfo.common.BisectionBean.Function.
 
BootStrapTester - class org.agmodel.bioinfo.antmap.BootStrapTester.
 
BootStrapTester(AcoMapFactory) - Constructor for class org.agmodel.bioinfo.antmap.BootStrapTester
 
BootstrapTest - class org.agmodel.bioinfo.antmapgui.BootstrapTest.
Thread for bootstrap test
BootstrapTest(JTextArea, JTextArea, DrawMapPanel, JProgressBar, MapData[], SegDataBean, OrderingOptionBean, AcoParamsBean, ThreadIndicator) - Constructor for class org.agmodel.bioinfo.antmapgui.BootstrapTest
 
bestTour - Variable in class org.agmodel.bioinfo.antmap.AntColony
 
bootStrap(char[][]) - Method in class org.agmodel.bioinfo.antmap.RMatrixFactory
 
bootstrapTest(OrderingOptionBean, AcoParamsBean) - Method in class org.agmodel.bioinfo.antmapgui.AntMapEngine
 
borderLayout1 - Variable in class org.agmodel.bioinfo.antmapgui.AboutGplDialog
 
borderLayout1 - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
buttonGroup - Variable in class org.agmodel.bioinfo.antmapgui.RadioButtonPanel
 
buttonGroup1 - Variable in class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel
 
buttonGroup1 - Variable in class org.agmodel.bioinfo.antmapgui.OrderingOptionPanel
 
buttonList - Variable in class org.agmodel.bioinfo.antmapgui.RadioButtonPanel
 

C

CR_DIST - Static variable in class org.agmodel.bioinfo.antmap.LGFactory
 
CR_DIST_NAME - Static variable in class org.agmodel.bioinfo.antmap.LGFactory
 
CR_LOD - Static variable in class org.agmodel.bioinfo.antmap.LGFactory
 
CR_LOD_NAME - Static variable in class org.agmodel.bioinfo.antmap.LGFactory
 
CR_P - Static variable in class org.agmodel.bioinfo.antmap.LGFactory
 
CR_P_NAME - Static variable in class org.agmodel.bioinfo.antmap.LGFactory
 
CR_R - Static variable in class org.agmodel.bioinfo.antmap.LGFactory
 
CR_R_NAME - Static variable in class org.agmodel.bioinfo.antmap.LGFactory
 
ChiSquareDist - class org.agmodel.bioinfo.stat.ChiSquareDist.
 
ChiSquareDist() - Constructor for class org.agmodel.bioinfo.stat.ChiSquareDist
 
Chromosome - class org.agmodel.bioinfo.segregation.Chromosome.
 
Chromosome() - Constructor for class org.agmodel.bioinfo.segregation.Chromosome
 
Chromosome(String) - Constructor for class org.agmodel.bioinfo.segregation.Chromosome
 
ComboBoxPanel - class org.agmodel.bioinfo.antmapgui.ComboBoxPanel.
Panel with jComboBox
ComboBoxPanel() - Constructor for class org.agmodel.bioinfo.antmapgui.ComboBoxPanel
 
ComboBoxPanel(String) - Constructor for class org.agmodel.bioinfo.antmapgui.ComboBoxPanel
 
ComboBoxPanel(String, Object[]) - Constructor for class org.agmodel.bioinfo.antmapgui.ComboBoxPanel
 
cbpFontName - Variable in class org.agmodel.bioinfo.antmapgui.FontChooser
 
cbpFontStyle - Variable in class org.agmodel.bioinfo.antmapgui.FontChooser
 
cbpTargetedGroup - Variable in class org.agmodel.bioinfo.antmapgui.OrderingOptionPanel
 
clear() - Method in class org.agmodel.bioinfo.antmapgui.DrawMapPanel
 
compareTo(Object) - Method in class org.agmodel.bioinfo.antmap.MarkerBean
 
compareTo(MarkerBean) - Method in class org.agmodel.bioinfo.antmap.MarkerBean
 
contentPane - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
convertD2E(double[][]) - Method in class org.agmodel.bioinfo.antmap.EMatrixFactory
 
convertR2D(double[][], int) - Method in class org.agmodel.bioinfo.antmap.DMatrixFactory
 
convertR2D_terminal(double[][], double, int) - Method in class org.agmodel.bioinfo.antmap.DMatrixFactory
 
convertR2LeqD(double[][]) - Method in class org.agmodel.bioinfo.antmap.LeqDMatrixFactory
 
convertRN2LD(double[][], int[][]) - Method in class org.agmodel.bioinfo.antmap.LDMatrixFactory
 
convertSegData2R_BC(char[][]) - Method in class org.agmodel.bioinfo.antmap.RMatrixFactory
 
convertSegData2R_DH(char[][]) - Method in class org.agmodel.bioinfo.antmap.RMatrixFactory
 
convertSegData2R_F2(char[][], int[]) - Method in class org.agmodel.bioinfo.antmap.RMatrixFactory
 
convertSegData2R_RIL(char[][]) - Method in class org.agmodel.bioinfo.antmap.RMatrixFactory
 

D

DMatrixFactory - class org.agmodel.bioinfo.antmap.DMatrixFactory.
 
DMatrixFactory() - Constructor for class org.agmodel.bioinfo.antmap.DMatrixFactory
 
DblParamPanel - class org.agmodel.bioinfo.antmapgui.DblParamPanel.
Panel for inputing a parameter in double
DblParamPanel() - Constructor for class org.agmodel.bioinfo.antmapgui.DblParamPanel
 
DblParamPanel(String, double, int) - Constructor for class org.agmodel.bioinfo.antmapgui.DblParamPanel
 
DblParamPanel_jButtonAlter_actionAdapter - class org.agmodel.bioinfo.antmapgui.DblParamPanel_jButtonAlter_actionAdapter.
 
DblParamPanel_jButtonAlter_actionAdapter(DblParamPanel) - Constructor for class org.agmodel.bioinfo.antmapgui.DblParamPanel_jButtonAlter_actionAdapter
 
DrawMapOptionBean - class org.agmodel.bioinfo.antmapgui.DrawMapOptionBean.
Bean for containing values of options for a linkage map drawing
DrawMapOptionBean() - Constructor for class org.agmodel.bioinfo.antmapgui.DrawMapOptionBean
 
DrawMapOptionPanel - class org.agmodel.bioinfo.antmapgui.DrawMapOptionPanel.
タイトル:
DrawMapOptionPanel() - Constructor for class org.agmodel.bioinfo.antmapgui.DrawMapOptionPanel
 
DrawMapPanel - class org.agmodel.bioinfo.antmapgui.DrawMapPanel.
タイトル:
DrawMapPanel() - Constructor for class org.agmodel.bioinfo.antmapgui.DrawMapPanel
 
depart(double[][]) - Method in class org.agmodel.bioinfo.antmap.Ant
Set out on a journey
dppAlpha - Variable in class org.agmodel.bioinfo.antmapgui.AcoParamsPanel
 
dppBeta - Variable in class org.agmodel.bioinfo.antmapgui.AcoParamsPanel
 
dppInitTau - Variable in class org.agmodel.bioinfo.antmapgui.AcoParamsPanel
 
dppPFancy - Variable in class org.agmodel.bioinfo.antmapgui.AcoParamsPanel
 
dppQ - Variable in class org.agmodel.bioinfo.antmapgui.AcoParamsPanel
 
dppRho - Variable in class org.agmodel.bioinfo.antmapgui.AcoParamsPanel
 
dppScaleFactor - Variable in class org.agmodel.bioinfo.antmapgui.DrawMapOptionPanel
 
dppThreshold - Variable in class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel
 
dppWeight - Variable in class org.agmodel.bioinfo.antmapgui.AcoParamsPanel
 
drawEachMap(MapData, int, int) - Method in class org.agmodel.bioinfo.antmapgui.DrawMapPanel
 
drawMap(MapData[]) - Method in class org.agmodel.bioinfo.antmapgui.DrawMapPanel
 
drawMapOptionPanel - Variable in class org.agmodel.bioinfo.antmapgui.AntMapOptionPanel
 
drawMapPanel - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 

E

EMatrixFactory - class org.agmodel.bioinfo.antmap.EMatrixFactory.
 
EMatrixFactory() - Constructor for class org.agmodel.bioinfo.antmap.EMatrixFactory
 
execute() - Method in class org.agmodel.bioinfo.antmap.LinkageAnalyzer
組換え価の計算
extractParitalArray(int[], int[]) - Method in class org.agmodel.bioinfo.antmap.PartialExtractor
 
extractParitalArray(String[], int[]) - Method in class org.agmodel.bioinfo.antmap.PartialExtractor
 
extractPartialGenotypeData(char[][], int[]) - Method in class org.agmodel.bioinfo.antmap.PartialExtractor
 
extractPartialMatrix(double[][], int[]) - Method in class org.agmodel.bioinfo.antmap.PartialExtractor
 

F

FileFormatException - exception org.agmodel.bioinfo.common.FileFormatException.
 
FileFormatException(String) - Constructor for class org.agmodel.bioinfo.common.FileFormatException
 
FisherInfoForRBean - class org.agmodel.bioinfo.segregation.FisherInfoForRBean.
 
FisherInfoForRBean() - Constructor for class org.agmodel.bioinfo.segregation.FisherInfoForRBean
コンストラクタ
FontChooser - class org.agmodel.bioinfo.antmapgui.FontChooser.
タイトル:
FontChooser(Frame, String, boolean) - Constructor for class org.agmodel.bioinfo.antmapgui.FontChooser
 
FontChooser(Frame) - Constructor for class org.agmodel.bioinfo.antmapgui.FontChooser
 
FontChooser() - Constructor for class org.agmodel.bioinfo.antmapgui.FontChooser
 
FontChooserPanel - class org.agmodel.bioinfo.antmapgui.FontChooserPanel.
タイトル:
FontChooserPanel() - Constructor for class org.agmodel.bioinfo.antmapgui.FontChooserPanel
 
FontChooserPanel_jButton_Setting_actionAdapter - class org.agmodel.bioinfo.antmapgui.FontChooserPanel_jButton_Setting_actionAdapter.
 
FontChooserPanel_jButton_Setting_actionAdapter(FontChooserPanel) - Constructor for class org.agmodel.bioinfo.antmapgui.FontChooserPanel_jButton_Setting_actionAdapter
 
FontChooser_jButton_Applly_actionAdapter - class org.agmodel.bioinfo.antmapgui.FontChooser_jButton_Applly_actionAdapter.
 
FontChooser_jButton_Applly_actionAdapter(FontChooser) - Constructor for class org.agmodel.bioinfo.antmapgui.FontChooser_jButton_Applly_actionAdapter
 
FontChooser_jButton_Cancel_actionAdapter - class org.agmodel.bioinfo.antmapgui.FontChooser_jButton_Cancel_actionAdapter.
 
FontChooser_jButton_Cancel_actionAdapter(FontChooser) - Constructor for class org.agmodel.bioinfo.antmapgui.FontChooser_jButton_Cancel_actionAdapter
 
FontChooser_jButton_Preview_actionAdapter - class org.agmodel.bioinfo.antmapgui.FontChooser_jButton_Preview_actionAdapter.
 
FontChooser_jButton_Preview_actionAdapter(FontChooser) - Constructor for class org.agmodel.bioinfo.antmapgui.FontChooser_jButton_Preview_actionAdapter
 
fcpGroupName - Variable in class org.agmodel.bioinfo.antmapgui.DrawMapOptionPanel
 
fcpMarkerInfo - Variable in class org.agmodel.bioinfo.antmapgui.DrawMapOptionPanel
 
findBestTour() - Method in class org.agmodel.bioinfo.antmap.AntColony
Find the best tour by using Ant Colony Optimization
findBestTour() - Method in class org.agmodel.bioinfo.antmap.AntColonyJNI
Find the best tour by using Ant Colony Optimization
findBestTour() - Method in interface org.agmodel.bioinfo.antmap.AntColonyOptimizer
Find the best tour by using Ant Colony Optimization
flowLayout1 - Variable in class org.agmodel.bioinfo.antmapgui.ComboBoxPanel
 
flowLayout1 - Variable in class org.agmodel.bioinfo.antmapgui.FontChooserPanel
 
format(String, int, boolean) - Method in class org.agmodel.bioinfo.common.StringFormat
 

G

GOFChiSqrTest - class org.agmodel.bioinfo.stat.GOFChiSqrTest.
 
GOFChiSqrTest(int[], double[]) - Constructor for class org.agmodel.bioinfo.stat.GOFChiSqrTest
Constructor
GPLFILE - Static variable in class org.agmodel.bioinfo.antmapgui.AboutGplDialog
 
GetIntParameterPanel_jButtonAlter_actionAdapter - class org.agmodel.bioinfo.antmapgui.GetIntParameterPanel_jButtonAlter_actionAdapter.
 
GetIntParameterPanel_jButtonAlter_actionAdapter(IntParamPanel) - Constructor for class org.agmodel.bioinfo.antmapgui.GetIntParameterPanel_jButtonAlter_actionAdapter
 
GroupDivider - class org.agmodel.bioinfo.antmap.GroupDivider.
 
GroupDivider() - Constructor for class org.agmodel.bioinfo.antmap.GroupDivider
 
GroupExtractor - class org.agmodel.bioinfo.antmap.GroupExtractor.
 
GroupExtractor(int[]) - Constructor for class org.agmodel.bioinfo.antmap.GroupExtractor
 
GroupExtractor(int[], int) - Constructor for class org.agmodel.bioinfo.antmap.GroupExtractor
 
GroupingOptionBean - class org.agmodel.bioinfo.antmap.GroupingOptionBean.
 
GroupingOptionBean() - Constructor for class org.agmodel.bioinfo.antmap.GroupingOptionBean
 
GroupingOptionPanel - class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel.
タイトル:
GroupingOptionPanel() - Constructor for class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel
 
GroupingOptionPanel_jRadioButtonDist_changeAdapter - class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel_jRadioButtonDist_changeAdapter.
 
GroupingOptionPanel_jRadioButtonDist_changeAdapter(GroupingOptionPanel) - Constructor for class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel_jRadioButtonDist_changeAdapter
 
getAcoParams() - Method in class org.agmodel.bioinfo.antmap.AcoMapFactory
 
getAcoParamsBean() - Method in class org.agmodel.bioinfo.antmapgui.AcoParamsPanel
 
getAcoParamsBean() - Method in class org.agmodel.bioinfo.antmapgui.AntMapOptionPanel
 
getAlpha() - Method in class org.agmodel.bioinfo.antmap.AcoParamsBean
 
getAntColonyOptimizer(AcoParamsBean, double[][]) - Method in class org.agmodel.bioinfo.antmap.ACOFactory
 
getAntColonyOptimizer(AcoParamsBean, double[][], long) - Method in class org.agmodel.bioinfo.antmap.ACOFactory
 
getBestMap(SegDataBean, int[], int, int) - Method in class org.agmodel.bioinfo.antmap.AcoMapFactory
 
getBeta() - Method in class org.agmodel.bioinfo.antmap.AcoParamsBean
 
getBootProb() - Method in class org.agmodel.bioinfo.antmap.MarkerBean
 
getBootStrapMap(SegDataBean, int[], int, int) - Method in class org.agmodel.bioinfo.antmap.AcoMapFactory
 
getBootStrappedR(SegDataBean) - Method in class org.agmodel.bioinfo.antmap.RMatrixFactory
 
getBootStrappedR(SegDataBean, int[]) - Method in class org.agmodel.bioinfo.antmap.RMatrixFactory
 
getChi2() - Method in class org.agmodel.bioinfo.segregation.RecombinationBean
 
getChiSqr() - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
 
getChiSqr() - Method in class org.agmodel.bioinfo.stat.GOFChiSqrTest
Get chi-square value
getContactAddress() - Method in class org.agmodel.bioinfo.antmapgui.AntMapInfo
Get contact address
getCopyright() - Method in class org.agmodel.bioinfo.antmapgui.AntMapInfo
Get copyright
getCriterion() - Method in class org.agmodel.bioinfo.antmap.GroupingOptionBean
 
getCriterion() - Method in class org.agmodel.bioinfo.antmap.OrderingOptionBean
 
getCriterion() - Method in class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel
 
getCriterionName(int) - Method in class org.agmodel.bioinfo.antmap.LGFactory
 
getCriterionName(int) - Static method in class org.agmodel.bioinfo.antmap.OrderingCriterion
 
getDescription() - Method in class org.agmodel.bioinfo.antmapgui.MyFileFilter
 
getDistance(double) - Method in class org.agmodel.bioinfo.segregation.MapFunction
 
getDrawMapOptionBean() - Method in class org.agmodel.bioinfo.antmapgui.AntMapOptionPanel
 
getDrawMapOptionBean() - Method in class org.agmodel.bioinfo.antmapgui.DrawMapOptionPanel
 
getDrawMapOptionBean() - Method in class org.agmodel.bioinfo.antmapgui.DrawMapPanel
 
getExpRatio() - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
get observed ratio
getExtension() - Method in class org.agmodel.bioinfo.antmapgui.MyFileFilter
 
getFisherInfo_BC(double, double) - Method in class org.agmodel.bioinfo.segregation.FisherInfoForRBean
Calculate Fisher's amount of information in BC generation
getFisherInfo_DH(double, double) - Method in class org.agmodel.bioinfo.segregation.FisherInfoForRBean
Calculate Fisher's amount of information in DH generation
getFisherInfo_F2_CC(double, double) - Method in class org.agmodel.bioinfo.segregation.FisherInfoForRBean
Calculate Fisher's amount of information between codominant markers in F2 generation
getFisherInfo_F2_CD(double, double) - Method in class org.agmodel.bioinfo.segregation.FisherInfoForRBean
Calculate Fisher's amount of information between codominant and domiant markers in F2 generation
getFisherInfo_F2_DD_Cup(double, double) - Method in class org.agmodel.bioinfo.segregation.FisherInfoForRBean
Calculate Fisher's amount of information between domiant markers in coupling phase in F2 generation
getFisherInfo_F2_DD_Rep(double, double) - Method in class org.agmodel.bioinfo.segregation.FisherInfoForRBean
Calculate Fisher's amount of information between domiant markers in repulsion phase in F2 generation
getFisherInfo_RIL(double, double) - Method in class org.agmodel.bioinfo.segregation.FisherInfoForRBean
Calculate Fisher's amount of information in RIL generation
getFontGroupName() - Method in class org.agmodel.bioinfo.antmapgui.DrawMapOptionBean
 
getFontMarkerInfo() - Method in class org.agmodel.bioinfo.antmapgui.DrawMapOptionBean
 
getFunction() - Method in class org.agmodel.bioinfo.segregation.MapFunction
 
getFunctionName(int) - Static method in class org.agmodel.bioinfo.segregation.MapFunction
 
getGamete() - Method in class org.agmodel.bioinfo.segregation.Chromosome
 
getGenotype() - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
 
getGenotypeData() - Method in class org.agmodel.bioinfo.antmap.SegDataBean
get segregation data
getGplNotice() - Method in class org.agmodel.bioinfo.antmapgui.AntMapInfo
Get GPL notice
getGroupExtractor(SegDataBean, int, int, double, int) - Method in class org.agmodel.bioinfo.antmap.LGFactory
 
getGroupIndex() - Method in class org.agmodel.bioinfo.antmap.OrderingOptionBean
 
getGroupIndex() - Method in class org.agmodel.bioinfo.antmapgui.OrderingOptionPanel
 
getGroupingIndex(double[][], double, boolean) - Method in class org.agmodel.bioinfo.antmap.GroupDivider
 
getGroupingIndexNNL(double[][], double, boolean) - Method in class org.agmodel.bioinfo.antmap.GroupDivider
 
getGroupingOptionBean() - Method in class org.agmodel.bioinfo.antmapgui.AntMapOptionPanel
 
getGroupingOptionBean() - Method in class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel
 
getHaldaneDistance(double) - Method in class org.agmodel.bioinfo.segregation.MapFunction
Calculate map distance from recombination rate on the basis of Holdane's function
getHaldaneRate(double) - Method in class org.agmodel.bioinfo.segregation.MapFunction
Calculate recombination rate from map distance on the basis of Holdane's function
getIndex() - Method in class org.agmodel.bioinfo.antmap.MarkerBean
 
getInit_tau() - Method in class org.agmodel.bioinfo.antmap.AcoParamsBean
 
getKosambiDistance(double) - Method in class org.agmodel.bioinfo.segregation.MapFunction
Calculate map distance from recombination rate on the basis of Kosambi's function
getKosambiRate(double) - Method in class org.agmodel.bioinfo.segregation.MapFunction
Calculate recombination rate from map distance on the basis of Kosambi's function
getLength() - Method in class org.agmodel.bioinfo.antmap.MapData
 
getLength() - Method in class org.agmodel.bioinfo.segregation.Chromosome
 
getLocation() - Method in class org.agmodel.bioinfo.antmap.MarkerBean
 
getLocation() - Method in class org.agmodel.bioinfo.segregation.Marker
 
getLod() - Method in class org.agmodel.bioinfo.antmap.LinkageAnalyzer
 
getLod() - Method in class org.agmodel.bioinfo.segregation.RecombinationBean
 
getLowerProb(int, double) - Static method in class org.agmodel.bioinfo.stat.ChiSquareDist
Calculate lower probability
getLowerProb(double) - Static method in class org.agmodel.bioinfo.stat.NormalDist
Calculate lower probability for normal distribution
getMapFunction() - Method in class org.agmodel.bioinfo.antmap.GroupingOptionBean
 
getMapFunction() - Method in class org.agmodel.bioinfo.antmap.LGFactory
 
getMapFunction() - Method in class org.agmodel.bioinfo.antmap.MapData
 
getMapFunction() - Method in class org.agmodel.bioinfo.antmap.OrderingOptionBean
 
getMapSpacing() - Method in class org.agmodel.bioinfo.antmapgui.DrawMapOptionBean
 
getMarginSize() - Method in class org.agmodel.bioinfo.antmapgui.DrawMapOptionBean
 
getMarker(int) - Method in class org.agmodel.bioinfo.antmap.MapData
 
getMarkerArray() - Method in class org.agmodel.bioinfo.segregation.Chromosome
 
getMarkerBootProb(int) - Method in class org.agmodel.bioinfo.antmap.MapData
 
getMarkerIndex(int) - Method in class org.agmodel.bioinfo.antmap.MapData
 
getMarkerIndexArray() - Method in class org.agmodel.bioinfo.antmap.MapData
 
getMarkerIndices(int) - Method in class org.agmodel.bioinfo.antmap.GroupExtractor
 
getMarkerLocation(int) - Method in class org.agmodel.bioinfo.antmap.MapData
 
getMarkerLocationArray() - Method in class org.agmodel.bioinfo.segregation.Chromosome
 
getMarkerName(int) - Method in class org.agmodel.bioinfo.antmap.MapData
 
getMarkerName() - Method in class org.agmodel.bioinfo.antmap.SegDataBean
 
getMarkerNameArray() - Method in class org.agmodel.bioinfo.segregation.Chromosome
 
getMarkerType() - Method in class org.agmodel.bioinfo.antmap.SegDataBean
 
getMarkerType(char[]) - Method in class org.agmodel.bioinfo.segregation.MarkerTypeGetter
Obtain marker type
getMarkerType() - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
 
getMarkerTypeArray() - Method in class org.agmodel.bioinfo.segregation.Chromosome
 
getMarkerTypeArray(char[][]) - Method in class org.agmodel.bioinfo.segregation.MarkerTypeGetter
Obtain marker type Array
getMaxIteration() - Method in class org.agmodel.bioinfo.antmap.OrderingOptionBean
 
getMessage() - Method in class org.agmodel.bioinfo.antmapgui.MyFileFilter
 
getMethod() - Method in class org.agmodel.bioinfo.antmap.GroupingOptionBean
 
getMethodName(int) - Method in class org.agmodel.bioinfo.antmap.LGFactory
 
getMinNMarker() - Method in class org.agmodel.bioinfo.antmap.GroupingOptionBean
 
getN() - Method in class org.agmodel.bioinfo.antmap.LinkageAnalyzer
 
getN(SegDataBean) - Method in class org.agmodel.bioinfo.antmap.NMatrixFactory
 
getN(SegDataBean, int[]) - Method in class org.agmodel.bioinfo.antmap.NMatrixFactory
 
getN() - Method in class org.agmodel.bioinfo.segregation.RecombinationBean
 
getNBootstrap() - Method in class org.agmodel.bioinfo.antmap.OrderingOptionBean
 
getNConfirm() - Method in class org.agmodel.bioinfo.antmap.OrderingOptionBean
 
getNMarker() - Method in class org.agmodel.bioinfo.antmap.MapData
 
getNMarker() - Method in class org.agmodel.bioinfo.segregation.Chromosome
 
getN_ant() - Method in class org.agmodel.bioinfo.antmap.AcoParamsBean
 
getN_data() - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
 
getN_exp() - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
 
getN_group() - Method in class org.agmodel.bioinfo.antmap.GroupExtractor
 
getN_individual() - Method in class org.agmodel.bioinfo.antmap.SegDataBean
get the number of individuals
getN_iteration() - Method in class org.agmodel.bioinfo.antmap.AcoParamsBean
 
getN_marker(int) - Method in class org.agmodel.bioinfo.antmap.GroupExtractor
 
getN_marker() - Method in class org.agmodel.bioinfo.antmap.SegDataBean
get the number of markers
getN_miss() - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
 
getN_obs() - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
 
getN_valid() - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
get the number of valid data
getName() - Method in class org.agmodel.bioinfo.antmap.MapData
 
getName() - Method in class org.agmodel.bioinfo.antmap.MarkerBean
 
getName() - Method in class org.agmodel.bioinfo.antmapgui.AntMapInfo
Get name
getName() - Method in class org.agmodel.bioinfo.segregation.Chromosome
 
getName() - Method in class org.agmodel.bioinfo.segregation.Marker
 
getObsRatio() - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
get observed ratio
getOrderedIndex(int[], int[]) - Method in class org.agmodel.bioinfo.antmap.IndexConverter
 
getOrderingOptionBean() - Method in class org.agmodel.bioinfo.antmapgui.AntMapOptionPanel
 
getOrderingOptionBean() - Method in class org.agmodel.bioinfo.antmapgui.OrderingOptionPanel
 
getP() - Method in class org.agmodel.bioinfo.antmap.LinkageAnalyzer
 
getP() - Method in class org.agmodel.bioinfo.segregation.RecombinationBean
 
getP() - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
 
getP() - Method in class org.agmodel.bioinfo.stat.GOFChiSqrTest
Get probability under null hypothesis,
getP_fancy() - Method in class org.agmodel.bioinfo.antmap.AcoParamsBean
 
getPanelHeight() - Method in class org.agmodel.bioinfo.antmapgui.DrawMapPanel
 
getPanelWidth() - Method in class org.agmodel.bioinfo.antmapgui.DrawMapPanel
 
getPhenotype(int, double) - Method in class org.agmodel.bioinfo.segregation.Chromosome
 
getPhenotype(int) - Method in class org.agmodel.bioinfo.segregation.Chromosome
 
getPreferredSize() - Method in class org.agmodel.bioinfo.antmapgui.DrawMapPanel
 
getQ() - Method in class org.agmodel.bioinfo.antmap.AcoParamsBean
 
getR() - Method in class org.agmodel.bioinfo.antmap.LinkageAnalyzer
 
getR(SegDataBean) - Method in class org.agmodel.bioinfo.antmap.RMatrixFactory
 
getR(SegDataBean, int[]) - Method in class org.agmodel.bioinfo.antmap.RMatrixFactory
 
getR_BC(char[], char[]) - Method in class org.agmodel.bioinfo.segregation.TwoPointAnalysis
 
getR_DH(char[], char[]) - Method in class org.agmodel.bioinfo.segregation.TwoPointAnalysis
 
getR_F2(char[], char[], int, int) - Method in class org.agmodel.bioinfo.segregation.TwoPointAnalysis
 
getR_RIL(char[], char[]) - Method in class org.agmodel.bioinfo.segregation.TwoPointAnalysis
 
getRange() - Method in class org.agmodel.bioinfo.antmapgui.DblParamPanel
 
getRange() - Method in class org.agmodel.bioinfo.antmapgui.IntParamPanel
 
getRate(double) - Method in class org.agmodel.bioinfo.segregation.MapFunction
 
getRecombinationBean_BC(char[], char[]) - Method in class org.agmodel.bioinfo.segregation.TwoPointAnalysis
Calculate recombination rate for backcross
getRecombinationBean_DH(char[], char[]) - Method in class org.agmodel.bioinfo.segregation.TwoPointAnalysis
Calculate recombination rate for doubled haploid
getRecombinationBean_F2(char[], char[], int, int) - Method in class org.agmodel.bioinfo.segregation.TwoPointAnalysis
Calculate recombination rate for F2
getRecombinationBean_RIL(char[], char[]) - Method in class org.agmodel.bioinfo.segregation.TwoPointAnalysis
Calculate recombination rate for recombinant inbred line
getRho() - Method in class org.agmodel.bioinfo.antmap.AcoParamsBean
 
getScaleFactor() - Method in class org.agmodel.bioinfo.antmapgui.DrawMapOptionBean
 
getSeed() - Method in class org.agmodel.bioinfo.antmap.AntColonyJNI
 
getSeg() - Method in class org.agmodel.bioinfo.antmap.LinkageAnalyzer
 
getSegData(String) - Method in class org.agmodel.bioinfo.antmap.SegDataReader
 
getSegData(int, int, double) - Method in class org.agmodel.bioinfo.segregation.SegDataFactory
 
getSegType() - Method in class org.agmodel.bioinfo.antmap.SegDataBean
get segregation type
getSegType() - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
 
getSegTypeCode(int) - Static method in class org.agmodel.bioinfo.segregation.SegType
 
getSegTypeName(int) - Static method in class org.agmodel.bioinfo.segregation.SegType
 
getSelectedFont() - Method in class org.agmodel.bioinfo.antmapgui.FontChooser
 
getSelectedFont() - Method in class org.agmodel.bioinfo.antmapgui.FontChooserPanel
 
getSelectedIndex() - Method in class org.agmodel.bioinfo.antmapgui.ComboBoxPanel
 
getSelectedIndex() - Method in class org.agmodel.bioinfo.antmapgui.RadioButtonPanel
 
getSelectedItem() - Method in class org.agmodel.bioinfo.antmapgui.ComboBoxPanel
 
getSigStars() - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
get starts for significance test
getStd_BC(double, double) - Method in class org.agmodel.bioinfo.segregation.FisherInfoForRBean
Calculate standard deviation of recombination rate in BC generation
getStd_DH(double, double) - Method in class org.agmodel.bioinfo.segregation.FisherInfoForRBean
Calculate standard deviation of recombination rate in DH generation
getStd_F2_CC(double, double) - Method in class org.agmodel.bioinfo.segregation.FisherInfoForRBean
Calculate standard deviation of recombination rate between codomiannt markers in F2 generation
getStd_F2_CD(double, double) - Method in class org.agmodel.bioinfo.segregation.FisherInfoForRBean
Calculate standard deviation of recombination rate between codominant and dominant markers in F2 generation
getStd_F2_DD_Cup(double, double) - Method in class org.agmodel.bioinfo.segregation.FisherInfoForRBean
Calculate standard deviation of recombination rate between dominant markers in couplihng phase in F2 generation
getStd_F2_DD_Rep(double, double) - Method in class org.agmodel.bioinfo.segregation.FisherInfoForRBean
Calculate standard deviation of recombination rate between dominant markers in repulsion phase in F2 generation
getStd_RIL(double, double) - Method in class org.agmodel.bioinfo.segregation.FisherInfoForRBean
Calculate standard deviation of recombination rate in RIL generation
getText() - Method in class org.agmodel.bioinfo.antmapgui.ComboBoxPanel
 
getText() - Method in class org.agmodel.bioinfo.antmapgui.DblParamPanel
 
getText() - Method in class org.agmodel.bioinfo.antmapgui.FontChooserPanel
 
getText() - Method in class org.agmodel.bioinfo.antmapgui.IntParamPanel
 
getText() - Method in class org.agmodel.bioinfo.antmapgui.RadioButtonPanel
 
getThreshold() - Method in class org.agmodel.bioinfo.antmap.GroupingOptionBean
 
getTourLength() - Method in class org.agmodel.bioinfo.antmap.TourBean
 
getTourOrder() - Method in class org.agmodel.bioinfo.antmap.Ant
Get tour order
getTourOrder() - Method in class org.agmodel.bioinfo.antmap.TourBean
 
getType() - Method in class org.agmodel.bioinfo.segregation.Marker
 
getUpperProb(int, double) - Static method in class org.agmodel.bioinfo.stat.ChiSquareDist
Calculate upper probability
getUpperProb(double) - Static method in class org.agmodel.bioinfo.stat.NormalDist
Calculate upper probability for normal distribution
getValue() - Method in class org.agmodel.bioinfo.antmapgui.DblParamPanel
 
getValue() - Method in class org.agmodel.bioinfo.antmapgui.IntParamPanel
 
getValue() - Method in class org.agmodel.bioinfo.segregation.RecombinationBean
 
getVersion() - Method in class org.agmodel.bioinfo.antmapgui.AntMapInfo
Get version
getWebAddress() - Method in class org.agmodel.bioinfo.antmapgui.AntMapInfo
Get web address
getWeight() - Method in class org.agmodel.bioinfo.antmap.AcoParamsBean
 
getZygote(int) - Method in class org.agmodel.bioinfo.segregation.Chromosome
 
gridLayout1 - Variable in class org.agmodel.bioinfo.antmapgui.AcoParamsPanel
 
gridLayout1 - Variable in class org.agmodel.bioinfo.antmapgui.DrawMapOptionPanel
 
gridLayout1 - Variable in class org.agmodel.bioinfo.antmapgui.FontChooser
 
gridLayout1 - Variable in class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel
 
gridLayout1 - Variable in class org.agmodel.bioinfo.antmapgui.OrderingOptionPanel
 
groupExtractor - Variable in class org.agmodel.bioinfo.antmapgui.AntColonyOrdering
 
groupExtractor - Variable in class org.agmodel.bioinfo.antmapgui.AntMapEngine
 
groupList - Variable in class org.agmodel.bioinfo.antmap.GroupExtractor
 
groupingOptionPanel - Variable in class org.agmodel.bioinfo.antmapgui.AntMapOptionPanel
 

I

IndexConverter - class org.agmodel.bioinfo.antmap.IndexConverter.
 
IndexConverter() - Constructor for class org.agmodel.bioinfo.antmap.IndexConverter
 
IntParamPanel - class org.agmodel.bioinfo.antmapgui.IntParamPanel.
タイトル:
IntParamPanel() - Constructor for class org.agmodel.bioinfo.antmapgui.IntParamPanel
 
IntParamPanel(String, int, int) - Constructor for class org.agmodel.bioinfo.antmapgui.IntParamPanel
 
inService - Variable in class org.agmodel.bioinfo.antmapgui.ThreadIndicator
 
ippFontSize - Variable in class org.agmodel.bioinfo.antmapgui.FontChooser
 
ippMapSpacing - Variable in class org.agmodel.bioinfo.antmapgui.DrawMapOptionPanel
 
ippMarginSize - Variable in class org.agmodel.bioinfo.antmapgui.DrawMapOptionPanel
 
ippMinNMarker - Variable in class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel
 
ippNAnt - Variable in class org.agmodel.bioinfo.antmapgui.AcoParamsPanel
 
ippNBootstrap - Variable in class org.agmodel.bioinfo.antmapgui.OrderingOptionPanel
 
ippNIteration - Variable in class org.agmodel.bioinfo.antmapgui.AcoParamsPanel
 
ippNIteration - Variable in class org.agmodel.bioinfo.antmapgui.OrderingOptionPanel
 
isApplied() - Method in class org.agmodel.bioinfo.antmapgui.FontChooser
 
isError() - Method in class org.agmodel.bioinfo.segregation.RecombinationBean
 
isInService() - Method in class org.agmodel.bioinfo.antmapgui.ThreadIndicator
 
isRandomize() - Method in class org.agmodel.bioinfo.antmap.AcoParamsBean
 
isShowBootstrapValue() - Method in class org.agmodel.bioinfo.antmapgui.DrawMapOptionBean
 
isShowBootstrapValue() - Method in class org.agmodel.bioinfo.antmapgui.DrawMapOptionPanel
 

J

jButton1 - Variable in class org.agmodel.bioinfo.antmapgui.AboutGplDialog
 
jButton1_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.AboutGplDialog
 
jButtonAlter - Variable in class org.agmodel.bioinfo.antmapgui.DblParamPanel
 
jButtonAlter - Variable in class org.agmodel.bioinfo.antmapgui.IntParamPanel
 
jButtonAlter_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.DblParamPanel
 
jButtonAlter_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.IntParamPanel
 
jButtonLoad - Variable in class org.agmodel.bioinfo.antmapgui.AcoParamsPanel
 
jButtonLoad_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.AcoParamsPanel
 
jButtonSave - Variable in class org.agmodel.bioinfo.antmapgui.AcoParamsPanel
 
jButtonSave_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.AcoParamsPanel
 
jButton_Applly - Variable in class org.agmodel.bioinfo.antmapgui.FontChooser
 
jButton_Applly_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.FontChooser
 
jButton_Cancel - Variable in class org.agmodel.bioinfo.antmapgui.FontChooser
 
jButton_Cancel_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.FontChooser
 
jButton_Preview - Variable in class org.agmodel.bioinfo.antmapgui.FontChooser
 
jButton_Preview_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.FontChooser
 
jButton_Setting - Variable in class org.agmodel.bioinfo.antmapgui.FontChooserPanel
 
jButton_Setting_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.FontChooserPanel
 
jComboBox1 - Variable in class org.agmodel.bioinfo.antmapgui.ComboBoxPanel
 
jFileChooser1 - Variable in class org.agmodel.bioinfo.antmapgui.AcoParamsPanel
 
jFileChooser1 - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jLabel1 - Variable in class org.agmodel.bioinfo.antmapgui.ComboBoxPanel
 
jLabel1 - Variable in class org.agmodel.bioinfo.antmapgui.RadioButtonPanel
 
jLabel2 - Variable in class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel
 
jLabelText - Variable in class org.agmodel.bioinfo.antmapgui.DblParamPanel
 
jLabelText - Variable in class org.agmodel.bioinfo.antmapgui.IntParamPanel
 
jLabelValue - Variable in class org.agmodel.bioinfo.antmapgui.DblParamPanel
 
jLabelValue - Variable in class org.agmodel.bioinfo.antmapgui.IntParamPanel
 
jLabel_FontInfo - Variable in class org.agmodel.bioinfo.antmapgui.FontChooserPanel
 
jLabel_Status - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jLabel_Text - Variable in class org.agmodel.bioinfo.antmapgui.FontChooserPanel
 
jMenuBar - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Anal_Boot - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Anal_Boot_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Anal_Full - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Anal_Full_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Anal_Group - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Anal_Group_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Anal_Order - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Anal_Order_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Anal_Redraw - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Anal_Redraw_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Anal_Seg - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Anal_Seg_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_File_Exit - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_File_Exit_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_File_Open - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_File_Open_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Help_About - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Help_About_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Help_Gpl - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Help_Gpl_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Save_Log - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Save_Log_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Save_Map - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Save_Map_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Save_Result - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenuItem_Save_Result_actionPerformed(ActionEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenu_Anal - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenu_File - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenu_Help - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jMenu_Save - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jPanel1 - Variable in class org.agmodel.bioinfo.antmapgui.AboutGplDialog
 
jPanel1 - Variable in class org.agmodel.bioinfo.antmapgui.AcoParamsPanel
 
jPanel1 - Variable in class org.agmodel.bioinfo.antmapgui.FontChooser
 
jPanel2 - Variable in class org.agmodel.bioinfo.antmapgui.FontChooser
 
jPanel2 - Variable in class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel
 
jProgressBar - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jRadioButtonDist - Variable in class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel
 
jRadioButtonDist_stateChanged(ChangeEvent) - Method in class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel
 
jRadioButtonLOD - Variable in class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel
 
jRadioButtonP - Variable in class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel
 
jRadioButtonR - Variable in class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel
 
jScrollPane1 - Variable in class org.agmodel.bioinfo.antmapgui.AboutGplDialog
 
jScrollPane1 - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jScrollPane2 - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jScrollPane3 - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jScrollPane4 - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jSplitPane1 - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jTabbedPane1 - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jTextArea1 - Variable in class org.agmodel.bioinfo.antmapgui.AboutGplDialog
 
jTextArea1 - Variable in class org.agmodel.bioinfo.antmapgui.FontChooser
 
jTextArea_data - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
jTextField - Variable in class org.agmodel.bioinfo.antmapgui.DblParamPanel
 
jTextField - Variable in class org.agmodel.bioinfo.antmapgui.IntParamPanel
 
jbInit() - Method in class org.agmodel.bioinfo.antmapgui.ComboBoxPanel
 
jbInit() - Method in class org.agmodel.bioinfo.antmapgui.DrawMapOptionPanel
 
jbInit() - Method in class org.agmodel.bioinfo.antmapgui.FontChooserPanel
 

L

LDMatrixFactory - class org.agmodel.bioinfo.antmap.LDMatrixFactory.
 
LDMatrixFactory() - Constructor for class org.agmodel.bioinfo.antmap.LDMatrixFactory
 
LGFactory - class org.agmodel.bioinfo.antmap.LGFactory.
 
LGFactory() - Constructor for class org.agmodel.bioinfo.antmap.LGFactory
 
LeqDMatrixFactory - class org.agmodel.bioinfo.antmap.LeqDMatrixFactory.
 
LeqDMatrixFactory() - Constructor for class org.agmodel.bioinfo.antmap.LeqDMatrixFactory
 
LinkageAnalyzer - class org.agmodel.bioinfo.antmap.LinkageAnalyzer.
 
LinkageAnalyzer(SegDataBean) - Constructor for class org.agmodel.bioinfo.antmap.LinkageAnalyzer
コンストラクタ
linkageGrouping(GroupingOptionBean) - Method in class org.agmodel.bioinfo.antmapgui.AntMapEngine
 
loadAcoParamsBean(String) - Method in class org.agmodel.bioinfo.antmap.AcoParamsReader
 
loadData(String) - Method in class org.agmodel.bioinfo.antmapgui.AntMapEngine
 
locusOrdering(OrderingOptionBean, AcoParamsBean) - Method in class org.agmodel.bioinfo.antmapgui.AntMapEngine
 
log - Variable in class org.agmodel.bioinfo.antmapgui.AntColonyOrdering
 
log - Variable in class org.agmodel.bioinfo.antmapgui.AntMapEngine
 
log - Variable in class org.agmodel.bioinfo.antmapgui.BootstrapTest
 

M

MAX_DIST - Static variable in class org.agmodel.bioinfo.segregation.MapFunction
 
MAX_HEIGHT - Static variable in class org.agmodel.bioinfo.antmapgui.DrawMapPanel
 
MAX_WIDTH - Static variable in class org.agmodel.bioinfo.antmapgui.DrawMapPanel
 
ME_ALL - Static variable in class org.agmodel.bioinfo.antmap.LGFactory
 
ME_ALL_NAME - Static variable in class org.agmodel.bioinfo.antmap.LGFactory
 
ME_NNL - Static variable in class org.agmodel.bioinfo.antmap.LGFactory
 
ME_NNL_NAME - Static variable in class org.agmodel.bioinfo.antmap.LGFactory
 
MF_HALDANE - Static variable in class org.agmodel.bioinfo.segregation.MapFunction
 
MF_HALDANE_NAME - Static variable in class org.agmodel.bioinfo.segregation.MapFunction
 
MF_KOSAMBI - Static variable in class org.agmodel.bioinfo.segregation.MapFunction
 
MF_KOSAMBI_NAME - Static variable in class org.agmodel.bioinfo.segregation.MapFunction
 
MINIMUM - Variable in class org.agmodel.bioinfo.antmap.EMatrixFactory
 
MT_CODOM - Static variable in class org.agmodel.bioinfo.segregation.MarkerType
 
MT_DOM_P1 - Static variable in class org.agmodel.bioinfo.segregation.MarkerType
 
MT_DOM_P2 - Static variable in class org.agmodel.bioinfo.segregation.MarkerType
 
MT_NA - Static variable in class org.agmodel.bioinfo.segregation.MarkerType
 
MainFrame - class org.agmodel.bioinfo.antmapgui.MainFrame.
Main frame of AntMap
MainFrame() - Constructor for class org.agmodel.bioinfo.antmapgui.MainFrame
 
MainFrame_jMenuItem_Anal_Boot_actionAdapter - class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Boot_actionAdapter.
 
MainFrame_jMenuItem_Anal_Boot_actionAdapter(MainFrame) - Constructor for class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Boot_actionAdapter
 
MainFrame_jMenuItem_Anal_Full_actionAdapter - class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Full_actionAdapter.
 
MainFrame_jMenuItem_Anal_Full_actionAdapter(MainFrame) - Constructor for class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Full_actionAdapter
 
MainFrame_jMenuItem_Anal_Group_actionAdapter - class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Group_actionAdapter.
 
MainFrame_jMenuItem_Anal_Group_actionAdapter(MainFrame) - Constructor for class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Group_actionAdapter
 
MainFrame_jMenuItem_Anal_Order_actionAdapter - class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Order_actionAdapter.
 
MainFrame_jMenuItem_Anal_Order_actionAdapter(MainFrame) - Constructor for class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Order_actionAdapter
 
MainFrame_jMenuItem_Anal_Redraw_actionAdapter - class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Redraw_actionAdapter.
 
MainFrame_jMenuItem_Anal_Redraw_actionAdapter(MainFrame) - Constructor for class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Redraw_actionAdapter
 
MainFrame_jMenuItem_Anal_Seg_actionAdapter - class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Seg_actionAdapter.
 
MainFrame_jMenuItem_Anal_Seg_actionAdapter(MainFrame) - Constructor for class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Anal_Seg_actionAdapter
 
MainFrame_jMenuItem_File_Exit_actionAdapter - class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_File_Exit_actionAdapter.
 
MainFrame_jMenuItem_File_Exit_actionAdapter(MainFrame) - Constructor for class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_File_Exit_actionAdapter
 
MainFrame_jMenuItem_File_Open_actionAdapter - class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_File_Open_actionAdapter.
 
MainFrame_jMenuItem_File_Open_actionAdapter(MainFrame) - Constructor for class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_File_Open_actionAdapter
 
MainFrame_jMenuItem_Help_About_actionAdapter - class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Help_About_actionAdapter.
 
MainFrame_jMenuItem_Help_About_actionAdapter(MainFrame) - Constructor for class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Help_About_actionAdapter
 
MainFrame_jMenuItem_Help_Gpl_actionAdapter - class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Help_Gpl_actionAdapter.
 
MainFrame_jMenuItem_Help_Gpl_actionAdapter(MainFrame) - Constructor for class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Help_Gpl_actionAdapter
 
MainFrame_jMenuItem_Save_Log_actionAdapter - class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Save_Log_actionAdapter.
 
MainFrame_jMenuItem_Save_Log_actionAdapter(MainFrame) - Constructor for class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Save_Log_actionAdapter
 
MainFrame_jMenuItem_Save_Map_actionAdapter - class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Save_Map_actionAdapter.
 
MainFrame_jMenuItem_Save_Map_actionAdapter(MainFrame) - Constructor for class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Save_Map_actionAdapter
 
MainFrame_jMenuItem_Save_Result_actionAdapter - class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Save_Result_actionAdapter.
 
MainFrame_jMenuItem_Save_Result_actionAdapter(MainFrame) - Constructor for class org.agmodel.bioinfo.antmapgui.MainFrame_jMenuItem_Save_Result_actionAdapter
 
MapData - class org.agmodel.bioinfo.antmap.MapData.
 
MapData() - Constructor for class org.agmodel.bioinfo.antmap.MapData
 
MapData(int) - Constructor for class org.agmodel.bioinfo.antmap.MapData
 
MapData(int[], int[], String[], double[][]) - Constructor for class org.agmodel.bioinfo.antmap.MapData
 
MapFunction - class org.agmodel.bioinfo.segregation.MapFunction.
 
MapFunction() - Constructor for class org.agmodel.bioinfo.segregation.MapFunction
 
MapFunction(int) - Constructor for class org.agmodel.bioinfo.segregation.MapFunction
 
Marker - class org.agmodel.bioinfo.segregation.Marker.
 
Marker() - Constructor for class org.agmodel.bioinfo.segregation.Marker
 
Marker(String) - Constructor for class org.agmodel.bioinfo.segregation.Marker
 
Marker(int) - Constructor for class org.agmodel.bioinfo.segregation.Marker
 
Marker(String, int) - Constructor for class org.agmodel.bioinfo.segregation.Marker
 
MarkerBean - class org.agmodel.bioinfo.antmap.MarkerBean.
 
MarkerBean() - Constructor for class org.agmodel.bioinfo.antmap.MarkerBean
 
MarkerType - class org.agmodel.bioinfo.segregation.MarkerType.
 
MarkerType() - Constructor for class org.agmodel.bioinfo.segregation.MarkerType
 
MarkerTypeGetter - class org.agmodel.bioinfo.segregation.MarkerTypeGetter.
 
MarkerTypeGetter() - Constructor for class org.agmodel.bioinfo.segregation.MarkerTypeGetter
 
MersenneTwister - class org.agmodel.bioinfo.stat.MersenneTwister.
 
MersenneTwister() - Constructor for class org.agmodel.bioinfo.stat.MersenneTwister
引数なしのコンストラクタ 時間がシードになる
MersenneTwister(long) - Constructor for class org.agmodel.bioinfo.stat.MersenneTwister
long型のシードを設定するコンストラクタ
MersenneTwister(int[]) - Constructor for class org.agmodel.bioinfo.stat.MersenneTwister
int型のシードを設定するコンストラクタ
MyFileFilter - class org.agmodel.bioinfo.antmapgui.MyFileFilter.
タイトル:
MyFileFilter(String, String) - Constructor for class org.agmodel.bioinfo.antmapgui.MyFileFilter
 
MyTextArea - class org.agmodel.bioinfo.antmapgui.MyTextArea.
タイトル:
MyTextArea() - Constructor for class org.agmodel.bioinfo.antmapgui.MyTextArea
 
main(String[]) - Static method in class org.agmodel.bioinfo.antmapgui.AntMap
 
map - Variable in class org.agmodel.bioinfo.antmapgui.AntColonyOrdering
 
map - Variable in class org.agmodel.bioinfo.antmapgui.AntMapEngine
 
map - Variable in class org.agmodel.bioinfo.antmapgui.BootstrapTest
 
mapData - Variable in class org.agmodel.bioinfo.antmapgui.AntColonyOrdering
 
mapData - Variable in class org.agmodel.bioinfo.antmapgui.AntMapEngine
 
mapData - Variable in class org.agmodel.bioinfo.antmapgui.BootstrapTest
 
move(double[][]) - Method in class org.agmodel.bioinfo.antmap.Ant
Move to the next stop
myTextArea_log - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 
myTextArea_result - Variable in class org.agmodel.bioinfo.antmapgui.MainFrame
 

N

NMatrixFactory - class org.agmodel.bioinfo.antmap.NMatrixFactory.
 
NMatrixFactory() - Constructor for class org.agmodel.bioinfo.antmap.NMatrixFactory
 
NormalDist - class org.agmodel.bioinfo.stat.NormalDist.
 
NormalDist() - Constructor for class org.agmodel.bioinfo.stat.NormalDist
 
n_ant - Variable in class org.agmodel.bioinfo.antmap.AntColony
 
next(int) - Method in class org.agmodel.bioinfo.stat.MersenneTwister
 

O

OC_LL - Static variable in class org.agmodel.bioinfo.antmap.OrderingCriterion
 
OC_LL_NAME - Static variable in class org.agmodel.bioinfo.antmap.OrderingCriterion
 
OC_SARF - Static variable in class org.agmodel.bioinfo.antmap.OrderingCriterion
 
OC_SARF_NAME - Static variable in class org.agmodel.bioinfo.antmap.OrderingCriterion
 
OrderAligner - class org.agmodel.bioinfo.antmap.OrderAligner.
 
OrderAligner() - Constructor for class org.agmodel.bioinfo.antmap.OrderAligner
 
OrderingCriterion - class org.agmodel.bioinfo.antmap.OrderingCriterion.
 
OrderingCriterion() - Constructor for class org.agmodel.bioinfo.antmap.OrderingCriterion
 
OrderingOptionBean - class org.agmodel.bioinfo.antmap.OrderingOptionBean.
 
OrderingOptionBean() - Constructor for class org.agmodel.bioinfo.antmap.OrderingOptionBean
 
OrderingOptionPanel - class org.agmodel.bioinfo.antmapgui.OrderingOptionPanel.
タイトル:
OrderingOptionPanel() - Constructor for class org.agmodel.bioinfo.antmapgui.OrderingOptionPanel
 
of(double) - Method in interface org.agmodel.bioinfo.common.BisectionBean.Function
 
of(double) - Method in class org.agmodel.bioinfo.segregation.Sr_CC
 
of(double) - Method in class org.agmodel.bioinfo.segregation.Sr_CD
 
of(double) - Method in class org.agmodel.bioinfo.segregation.Sr_DD_Cup
 
of(double) - Method in class org.agmodel.bioinfo.segregation.Sr_DD_Rep
 
orderingOptionBean - Variable in class org.agmodel.bioinfo.antmapgui.AntColonyOrdering
 
orderingOptionBean - Variable in class org.agmodel.bioinfo.antmapgui.BootstrapTest
 
orderingOptionPanel - Variable in class org.agmodel.bioinfo.antmapgui.AntMapOptionPanel
 
org.agmodel.bioinfo.antmap - package org.agmodel.bioinfo.antmap
 
org.agmodel.bioinfo.antmapgui - package org.agmodel.bioinfo.antmapgui
 
org.agmodel.bioinfo.common - package org.agmodel.bioinfo.common
このパッケージについての1文の概要説明で始めてください。 続けて説明の残りの部分を記述してください。
org.agmodel.bioinfo.segregation - package org.agmodel.bioinfo.segregation
このパッケージについての1文の概要説明で始めてください。 続けて説明の残りの部分を記述してください。
org.agmodel.bioinfo.stat - package org.agmodel.bioinfo.stat
 

P

PartialExtractor - class org.agmodel.bioinfo.antmap.PartialExtractor.
 
PartialExtractor() - Constructor for class org.agmodel.bioinfo.antmap.PartialExtractor
 
packFrame - Variable in class org.agmodel.bioinfo.antmapgui.AntMap
 
paintComponent(Graphics) - Method in class org.agmodel.bioinfo.antmapgui.DrawMapPanel
 
panel1 - Variable in class org.agmodel.bioinfo.antmapgui.FontChooser
 
prepareForJourney() - Method in class org.agmodel.bioinfo.antmap.Ant
Prepare for a journey
(Initialize flags for visited cities)
processWindowEvent(WindowEvent) - Method in class org.agmodel.bioinfo.antmapgui.MainFrame
 
progress - Variable in class org.agmodel.bioinfo.antmapgui.AntColonyOrdering
 
progress - Variable in class org.agmodel.bioinfo.antmapgui.AntMapEngine
 
progress - Variable in class org.agmodel.bioinfo.antmapgui.BootstrapTest
 

R

RMatrixFactory - class org.agmodel.bioinfo.antmap.RMatrixFactory.
 
RMatrixFactory() - Constructor for class org.agmodel.bioinfo.antmap.RMatrixFactory
 
RadioButtonPanel - class org.agmodel.bioinfo.antmapgui.RadioButtonPanel.
タイトル:
RadioButtonPanel() - Constructor for class org.agmodel.bioinfo.antmapgui.RadioButtonPanel
 
RadioButtonPanel(String) - Constructor for class org.agmodel.bioinfo.antmapgui.RadioButtonPanel
 
RadioButtonPanel(String, String[]) - Constructor for class org.agmodel.bioinfo.antmapgui.RadioButtonPanel
 
RecombinationBean - class org.agmodel.bioinfo.segregation.RecombinationBean.
 
RecombinationBean() - Constructor for class org.agmodel.bioinfo.segregation.RecombinationBean
 
rbpBootstrapProb - Variable in class org.agmodel.bioinfo.antmapgui.DrawMapOptionPanel
 
rbpCriterion - Variable in class org.agmodel.bioinfo.antmapgui.OrderingOptionPanel
 
rbpMapFunction - Variable in class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel
 
rbpMapFunction - Variable in class org.agmodel.bioinfo.antmapgui.OrderingOptionPanel
 
rbpMethod - Variable in class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel
 
redrawMap() - Method in class org.agmodel.bioinfo.antmapgui.AntMapEngine
 
removeAllItems() - Method in class org.agmodel.bioinfo.antmapgui.ComboBoxPanel
 
removeItemAt(int) - Method in class org.agmodel.bioinfo.antmapgui.ComboBoxPanel
 
result - Variable in class org.agmodel.bioinfo.antmapgui.AntColonyOrdering
 
result - Variable in class org.agmodel.bioinfo.antmapgui.AntMapEngine
 
result - Variable in class org.agmodel.bioinfo.antmapgui.BootstrapTest
 
run() - Method in class org.agmodel.bioinfo.antmapgui.AntColonyOrdering
 
run() - Method in class org.agmodel.bioinfo.antmapgui.BootstrapTest
 

S

ST_BC - Static variable in class org.agmodel.bioinfo.segregation.SegType
 
ST_DH - Static variable in class org.agmodel.bioinfo.segregation.SegType
 
ST_F2 - Static variable in class org.agmodel.bioinfo.segregation.SegType
 
ST_NA - Static variable in class org.agmodel.bioinfo.segregation.SegType
 
ST_RIL - Static variable in class org.agmodel.bioinfo.segregation.SegType
 
SegDataBean - class org.agmodel.bioinfo.antmap.SegDataBean.
 
SegDataBean() - Constructor for class org.agmodel.bioinfo.antmap.SegDataBean
引数なしのコンストラクタ
SegDataBean(int, String[], char[][]) - Constructor for class org.agmodel.bioinfo.antmap.SegDataBean
引数つきのコンストラクタ
SegDataFactory - class org.agmodel.bioinfo.segregation.SegDataFactory.
 
SegDataFactory() - Constructor for class org.agmodel.bioinfo.segregation.SegDataFactory
 
SegDataReader - class org.agmodel.bioinfo.antmap.SegDataReader.
 
SegDataReader(File) - Constructor for class org.agmodel.bioinfo.antmap.SegDataReader
 
SegDataReader(String) - Constructor for class org.agmodel.bioinfo.antmap.SegDataReader
 
SegDataVerifier - class org.agmodel.bioinfo.antmap.SegDataVerifier.
 
SegDataVerifier() - Constructor for class org.agmodel.bioinfo.antmap.SegDataVerifier
 
SegRatioBean - class org.agmodel.bioinfo.segregation.SegRatioBean.
 
SegRatioBean() - Constructor for class org.agmodel.bioinfo.segregation.SegRatioBean
Constructor
SegRatioTest - class org.agmodel.bioinfo.segregation.SegRatioTest.
 
SegRatioTest() - Constructor for class org.agmodel.bioinfo.segregation.SegRatioTest
 
SegRatioTester - class org.agmodel.bioinfo.antmap.SegRatioTester.
 
SegRatioTester() - Constructor for class org.agmodel.bioinfo.antmap.SegRatioTester
 
SegType - class org.agmodel.bioinfo.segregation.SegType.
 
SegType() - Constructor for class org.agmodel.bioinfo.segregation.SegType
 
Sr_CC - class org.agmodel.bioinfo.segregation.Sr_CC.
 
Sr_CC(int[]) - Constructor for class org.agmodel.bioinfo.segregation.Sr_CC
 
Sr_CD - class org.agmodel.bioinfo.segregation.Sr_CD.
 
Sr_CD(int[]) - Constructor for class org.agmodel.bioinfo.segregation.Sr_CD
 
Sr_DD_Cup - class org.agmodel.bioinfo.segregation.Sr_DD_Cup.
 
Sr_DD_Cup(int[]) - Constructor for class org.agmodel.bioinfo.segregation.Sr_DD_Cup
 
Sr_DD_Rep - class org.agmodel.bioinfo.segregation.Sr_DD_Rep.
 
Sr_DD_Rep(int[]) - Constructor for class org.agmodel.bioinfo.segregation.Sr_DD_Rep
 
StringFormat - class org.agmodel.bioinfo.common.StringFormat.
 
StringFormat() - Constructor for class org.agmodel.bioinfo.common.StringFormat
 
saveAcoParamsBean(String, AcoParamsBean) - Method in class org.agmodel.bioinfo.antmap.AcoParamsWriter
 
saveImage(File, float) - Method in class org.agmodel.bioinfo.antmapgui.DrawMapPanel
 
saveText(File) - Method in class org.agmodel.bioinfo.antmapgui.MyTextArea
 
secretePheromone(double[][]) - Method in class org.agmodel.bioinfo.antmap.Ant
Secrete pheromone on the tau matrix
segDataBean - Variable in class org.agmodel.bioinfo.antmapgui.AntColonyOrdering
 
segDataBean - Variable in class org.agmodel.bioinfo.antmapgui.AntMapEngine
 
segDataBean - Variable in class org.agmodel.bioinfo.antmapgui.BootstrapTest
 
setAcoParams(AcoParamsBean) - Method in class org.agmodel.bioinfo.antmap.AcoMapFactory
 
setAcoParamsBean(AcoParamsBean) - Method in class org.agmodel.bioinfo.antmapgui.AcoParamsPanel
 
setAcoParamsBean(AcoParamsBean) - Method in class org.agmodel.bioinfo.antmapgui.AntMapOptionPanel
 
setAlpha(double) - Method in class org.agmodel.bioinfo.antmap.AcoParamsBean
set alpha
setBeta(double) - Method in class org.agmodel.bioinfo.antmap.AcoParamsBean
set beta
setBootProb(double) - Method in class org.agmodel.bioinfo.antmap.MarkerBean
 
setChi2(double) - Method in class org.agmodel.bioinfo.segregation.RecombinationBean
 
setChiSqr(double) - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
 
setCriterion(int) - Method in class org.agmodel.bioinfo.antmap.GroupingOptionBean
 
setCriterion(int) - Method in class org.agmodel.bioinfo.antmap.OrderingOptionBean
 
setCriterion(int) - Method in class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel
 
setDefaultFont(Font) - Method in class org.agmodel.bioinfo.antmapgui.FontChooser
 
setDrawMapOptionBean(DrawMapOptionBean) - Method in class org.agmodel.bioinfo.antmapgui.AntMapOptionPanel
 
setDrawMapOptionBean(DrawMapOptionBean) - Method in class org.agmodel.bioinfo.antmapgui.DrawMapOptionPanel
 
setDrawMapOptionBean(DrawMapOptionBean) - Method in class org.agmodel.bioinfo.antmapgui.DrawMapPanel
 
setEnabled(boolean) - Method in class org.agmodel.bioinfo.antmapgui.RadioButtonPanel
 
setError(boolean) - Method in class org.agmodel.bioinfo.segregation.RecombinationBean
 
setFontGroupName(Font) - Method in class org.agmodel.bioinfo.antmapgui.DrawMapOptionBean
 
setFontMarkerInfo(Font) - Method in class org.agmodel.bioinfo.antmapgui.DrawMapOptionBean
 
setFunction(int) - Method in class org.agmodel.bioinfo.segregation.MapFunction
 
setGenotype(char[]) - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
 
setGenotypeData(char[][]) - Method in class org.agmodel.bioinfo.antmap.SegDataBean
set segregation data
setGroupIndex(int) - Method in class org.agmodel.bioinfo.antmap.OrderingOptionBean
 
setGroupNames(String[]) - Method in class org.agmodel.bioinfo.antmapgui.OrderingOptionPanel
 
setGroupingOptionBean(GroupingOptionBean) - Method in class org.agmodel.bioinfo.antmapgui.AntMapOptionPanel
 
setGroupingOptionBean(GroupingOptionBean) - Method in class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel
 
setInService(boolean) - Method in class org.agmodel.bioinfo.antmapgui.ThreadIndicator
 
setIndex(int) - Method in class org.agmodel.bioinfo.antmap.MarkerBean
 
setInit_tau(double) - Method in class org.agmodel.bioinfo.antmap.AcoParamsBean
set init_tau
setLocation(double) - Method in class org.agmodel.bioinfo.antmap.MarkerBean
 
setLocation(double) - Method in class org.agmodel.bioinfo.segregation.Marker
 
setLod(double) - Method in class org.agmodel.bioinfo.segregation.RecombinationBean
 
setMapFunction(int) - Method in class org.agmodel.bioinfo.antmap.GroupingOptionBean
 
setMapFunction(int) - Method in class org.agmodel.bioinfo.antmap.LGFactory
 
setMapFunction(int) - Method in class org.agmodel.bioinfo.antmap.MapData
 
setMapFunction(int) - Method in class org.agmodel.bioinfo.antmap.OrderingOptionBean
 
setMapSpacing(int) - Method in class org.agmodel.bioinfo.antmapgui.DrawMapOptionBean
 
setMarginSize(int) - Method in class org.agmodel.bioinfo.antmapgui.DrawMapOptionBean
 
setMarkerBootProb(int, double) - Method in class org.agmodel.bioinfo.antmap.MapData
 
setMarkerName(String[]) - Method in class org.agmodel.bioinfo.antmap.SegDataBean
 
setMarkerType(int[]) - Method in class org.agmodel.bioinfo.antmap.SegDataBean
 
setMarkerType(int) - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
 
setMarkers(int[], int[], String[], double[][]) - Method in class org.agmodel.bioinfo.antmap.MapData
 
setMaxIteration(int) - Method in class org.agmodel.bioinfo.antmap.OrderingOptionBean
 
setMethod(int) - Method in class org.agmodel.bioinfo.antmap.GroupingOptionBean
 
setMinNMarker(int) - Method in class org.agmodel.bioinfo.antmap.GroupingOptionBean
 
setN(int) - Method in class org.agmodel.bioinfo.segregation.RecombinationBean
 
setNBootstrap(int) - Method in class org.agmodel.bioinfo.antmap.OrderingOptionBean
 
setNConfirm(int) - Method in class org.agmodel.bioinfo.antmap.OrderingOptionBean
 
setN_ant(int) - Method in class org.agmodel.bioinfo.antmap.AcoParamsBean
set n_ant (number of ants)
setN_data(int) - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
 
setN_exp(double[]) - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
 
setN_iteration(int) - Method in class org.agmodel.bioinfo.antmap.AcoParamsBean
set n_replicate (number of replicates)
setN_miss(int) - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
 
setN_obs(int[]) - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
 
setName(String) - Method in class org.agmodel.bioinfo.antmap.MapData
 
setName(String) - Method in class org.agmodel.bioinfo.antmap.MarkerBean
 
setName(String) - Method in class org.agmodel.bioinfo.segregation.Marker
 
setOrderingGroupNames(String[]) - Method in class org.agmodel.bioinfo.antmapgui.AntMapOptionPanel
 
setOrderingOptionBean(OrderingOptionBean) - Method in class org.agmodel.bioinfo.antmapgui.AntMapOptionPanel
 
setOrderingOptionBean(OrderingOptionBean) - Method in class org.agmodel.bioinfo.antmapgui.OrderingOptionPanel
 
setP(double) - Method in class org.agmodel.bioinfo.segregation.RecombinationBean
 
setP(double) - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
 
setP_fancy(double) - Method in class org.agmodel.bioinfo.antmap.AcoParamsBean
set p_fancy (probability of fancy choice)
setPanelSize(int, int) - Method in class org.agmodel.bioinfo.antmapgui.DrawMapPanel
 
setQ(double) - Method in class org.agmodel.bioinfo.antmap.AcoParamsBean
set q
setRange(int) - Method in class org.agmodel.bioinfo.antmapgui.DblParamPanel
 
setRange(int) - Method in class org.agmodel.bioinfo.antmapgui.IntParamPanel
 
setRho(double) - Method in class org.agmodel.bioinfo.antmap.AcoParamsBean
set rho
setScaleFactor(double) - Method in class org.agmodel.bioinfo.antmapgui.DrawMapOptionBean
 
setSeed(long) - Method in class org.agmodel.bioinfo.antmap.AntColonyJNI
 
setSeed(long) - Method in class org.agmodel.bioinfo.stat.MersenneTwister
long型のシードの設定
setSeed(int[]) - Method in class org.agmodel.bioinfo.stat.MersenneTwister
 
setSegDataBean(SegDataBean) - Method in class org.agmodel.bioinfo.antmap.LinkageAnalyzer
SegDataBeanのセッター
setSegType(int) - Method in class org.agmodel.bioinfo.antmap.SegDataBean
set segregation type
setSegType(int) - Method in class org.agmodel.bioinfo.segregation.SegRatioBean
 
setSelectedFont(Font) - Method in class org.agmodel.bioinfo.antmapgui.FontChooserPanel
 
setSelectedIndex(int) - Method in class org.agmodel.bioinfo.antmapgui.ComboBoxPanel
 
setSelectedIndex(int) - Method in class org.agmodel.bioinfo.antmapgui.RadioButtonPanel
 
setSelectedItem(Object) - Method in class org.agmodel.bioinfo.antmapgui.ComboBoxPanel
 
setShowBootstrapValue(boolean) - Method in class org.agmodel.bioinfo.antmapgui.DrawMapOptionBean
 
setShowBootstrapValue(boolean) - Method in class org.agmodel.bioinfo.antmapgui.DrawMapOptionPanel
 
setStatusLabel(JLabel) - Method in class org.agmodel.bioinfo.antmapgui.ThreadIndicator
 
setText(String) - Method in class org.agmodel.bioinfo.antmapgui.ComboBoxPanel
 
setText(String) - Method in class org.agmodel.bioinfo.antmapgui.DblParamPanel
 
setText(String) - Method in class org.agmodel.bioinfo.antmapgui.FontChooserPanel
 
setText(String) - Method in class org.agmodel.bioinfo.antmapgui.IntParamPanel
 
setText(String) - Method in class org.agmodel.bioinfo.antmapgui.RadioButtonPanel
 
setThreshold(double) - Method in class org.agmodel.bioinfo.antmap.GroupingOptionBean
 
setTourLength(double) - Method in class org.agmodel.bioinfo.antmap.Ant
Set tour length
setTourLength(double) - Method in class org.agmodel.bioinfo.antmap.TourBean
 
setTourOrder(int[]) - Method in class org.agmodel.bioinfo.antmap.TourBean
 
setType(int) - Method in class org.agmodel.bioinfo.segregation.Marker
 
setValue(double) - Method in class org.agmodel.bioinfo.antmapgui.DblParamPanel
 
setValue(int) - Method in class org.agmodel.bioinfo.antmapgui.IntParamPanel
 
setValue(double) - Method in class org.agmodel.bioinfo.segregation.RecombinationBean
 
setWeight(double) - Method in class org.agmodel.bioinfo.antmap.AcoParamsBean
 
show() - Method in class org.agmodel.bioinfo.antmap.AcoParamsBean
 
show() - Method in class org.agmodel.bioinfo.antmap.MapData
 
show() - Method in class org.agmodel.bioinfo.antmap.TourBean
標準出力への内容の表示
show(PrintStream) - Method in class org.agmodel.bioinfo.antmap.TourBean
 
show() - Method in class org.agmodel.bioinfo.segregation.Chromosome
 
showBootProb() - Method in class org.agmodel.bioinfo.antmap.MapData
 
showDialog(Component) - Method in class org.agmodel.bioinfo.antmapgui.AboutGplDialog
 
showDialog(Component) - Method in class org.agmodel.bioinfo.antmapgui.FontChooser
 
showGamete() - Method in class org.agmodel.bioinfo.segregation.Chromosome
 
showLocation() - Method in class org.agmodel.bioinfo.antmap.MapData
 
showOrder() - Method in class org.agmodel.bioinfo.antmap.TourBean
 
showOrder(PrintStream) - Method in class org.agmodel.bioinfo.antmap.TourBean
 
showPhenotype(int, double) - Method in class org.agmodel.bioinfo.segregation.Chromosome
 
showPhenotype(int) - Method in class org.agmodel.bioinfo.segregation.Chromosome
 
showZygote(int) - Method in class org.agmodel.bioinfo.segregation.Chromosome
 
solve(BisectionBean.Function, double, double, double) - Static method in class org.agmodel.bioinfo.common.BisectionBean
 
stateChanged(ChangeEvent) - Method in class org.agmodel.bioinfo.antmapgui.GroupingOptionPanel_jRadioButtonDist_changeAdapter
 
status - Variable in class org.agmodel.bioinfo.antmapgui.AntMapEngine
 
status - Variable in class org.agmodel.bioinfo.antmapgui.ThreadIndicator
 

T

ThreadIndicator - class org.agmodel.bioinfo.antmapgui.ThreadIndicator.
タイトル:
ThreadIndicator() - Constructor for class org.agmodel.bioinfo.antmapgui.ThreadIndicator
 
TourBean - class org.agmodel.bioinfo.antmap.TourBean.
 
TourBean() - Constructor for class org.agmodel.bioinfo.antmap.TourBean
引数なしのコンストラクタ tourOrderは、int[1]でnewされる
TourBean(double, int[]) - Constructor for class org.agmodel.bioinfo.antmap.TourBean
引数つきのコンストラクタ
TwoPointAnalysis - class org.agmodel.bioinfo.segregation.TwoPointAnalysis.
 
TwoPointAnalysis() - Constructor for class org.agmodel.bioinfo.segregation.TwoPointAnalysis
 
test(int, char[]) - Method in class org.agmodel.bioinfo.segregation.SegRatioTest
test under normal segregation in segType generation
testAllLoci(SegDataBean) - Method in class org.agmodel.bioinfo.antmap.SegRatioTester
 
testBC(char[]) - Method in class org.agmodel.bioinfo.segregation.SegRatioTest
test under normal segregation in BC generation
testDH(char[]) - Method in class org.agmodel.bioinfo.segregation.SegRatioTest
test under normal segregation in DH generation
testF2(char[]) - Method in class org.agmodel.bioinfo.segregation.SegRatioTest
get probability under normal segregation in F2 generation
testOrder(SegDataBean, MapData, int, int, int) - Method in class org.agmodel.bioinfo.antmap.BootStrapTester
 
testRIL(char[]) - Method in class org.agmodel.bioinfo.segregation.SegRatioTest
get probability under normal segregation in RIL infinite generation
testSegregation() - Method in class org.agmodel.bioinfo.antmapgui.AntMapEngine
 
text - Variable in class org.agmodel.bioinfo.antmapgui.RadioButtonPanel
 
threadIndicator - Variable in class org.agmodel.bioinfo.antmapgui.AntColonyOrdering
 
threadIndicator - Variable in class org.agmodel.bioinfo.antmapgui.AntMapEngine
 
threadIndicator - Variable in class org.agmodel.bioinfo.antmapgui.BootstrapTest
 
tpa - Variable in class org.agmodel.bioinfo.antmap.RMatrixFactory
 

V

VR_ALL - Static variable in class org.agmodel.bioinfo.antmapgui.DblParamPanel
 
VR_ALL - Static variable in class org.agmodel.bioinfo.antmapgui.IntParamPanel
 
VR_NEGATIVE - Static variable in class org.agmodel.bioinfo.antmapgui.DblParamPanel
 
VR_NEGATIVE - Static variable in class org.agmodel.bioinfo.antmapgui.IntParamPanel
 
VR_NEGATIVE_AND_ZERO - Static variable in class org.agmodel.bioinfo.antmapgui.DblParamPanel
 
VR_NEGATIVE_AND_ZERO - Static variable in class org.agmodel.bioinfo.antmapgui.IntParamPanel
 
VR_POSITIVE - Static variable in class org.agmodel.bioinfo.antmapgui.DblParamPanel
 
VR_POSITIVE - Static variable in class org.agmodel.bioinfo.antmapgui.IntParamPanel
 
VR_POSITIVE_AND_ZERO - Static variable in class org.agmodel.bioinfo.antmapgui.DblParamPanel
 
VR_POSITIVE_AND_ZERO - Static variable in class org.agmodel.bioinfo.antmapgui.IntParamPanel
 
verify(SegDataBean) - Method in class org.agmodel.bioinfo.antmap.SegDataVerifier
 

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