org.agmodel.bioinfo.antmap
Class RMatrixFactory

java.lang.Object
  extended byorg.agmodel.bioinfo.antmap.RMatrixFactory

public class RMatrixFactory
extends java.lang.Object


Field Summary
(package private)  TwoPointAnalysis tpa
           
 
Constructor Summary
RMatrixFactory()
           
 
Method Summary
 char[][] bootStrap(char[][] genotypeData)
           
 double[][] convertSegData2R_BC(char[][] genotypeData)
           
 double[][] convertSegData2R_DH(char[][] genotypeData)
           
 double[][] convertSegData2R_F2(char[][] genotypeData, int[] markerType)
           
 double[][] convertSegData2R_RIL(char[][] genotypeData)
           
 double[][] getBootStrappedR(SegDataBean segDataBean)
           
 double[][] getBootStrappedR(SegDataBean segDataBean, int[] markerIndex)
           
 double[][] getR(SegDataBean segDataBean)
           
 double[][] getR(SegDataBean segDataBean, int[] markerIndex)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

tpa

TwoPointAnalysis tpa
Constructor Detail

RMatrixFactory

public RMatrixFactory()
Method Detail

getR

public double[][] getR(SegDataBean segDataBean)

getR

public double[][] getR(SegDataBean segDataBean,
                       int[] markerIndex)

getBootStrappedR

public double[][] getBootStrappedR(SegDataBean segDataBean)

getBootStrappedR

public double[][] getBootStrappedR(SegDataBean segDataBean,
                                   int[] markerIndex)

bootStrap

public char[][] bootStrap(char[][] genotypeData)

convertSegData2R_BC

public double[][] convertSegData2R_BC(char[][] genotypeData)

convertSegData2R_DH

public double[][] convertSegData2R_DH(char[][] genotypeData)

convertSegData2R_RIL

public double[][] convertSegData2R_RIL(char[][] genotypeData)

convertSegData2R_F2

public double[][] convertSegData2R_F2(char[][] genotypeData,
                                      int[] markerType)