org.agmodel.bioinfo.antmap
Class MapData

java.lang.Object
  extended byorg.agmodel.bioinfo.antmap.MapData

public class MapData
extends java.lang.Object


Constructor Summary
MapData()
           
MapData(int mapFunction)
           
MapData(int[] markerIndex, int[] bestOrder, java.lang.String[] name, double[][] r)
           
 
Method Summary
 void alignMarkers()
           
 double getLength()
           
 int getMapFunction()
           
 MarkerBean getMarker(int i)
           
 double getMarkerBootProb(int i)
           
 int getMarkerIndex(int i)
           
 int[] getMarkerIndexArray()
           
 double getMarkerLocation(int i)
           
 java.lang.String getMarkerName(int i)
           
 java.lang.String getName()
           
 int getNMarker()
           
 void setMapFunction(int i)
           
 boolean setMarkerBootProb(int i, double bootProb)
           
 void setMarkers(int[] markerIndex, int[] bestOrder, java.lang.String[] name, double[][] r)
           
 void setName(java.lang.String string)
           
 void show()
           
 void showBootProb()
           
 void showLocation()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

MapData

public MapData()

MapData

public MapData(int mapFunction)

MapData

public MapData(int[] markerIndex,
               int[] bestOrder,
               java.lang.String[] name,
               double[][] r)
Method Detail

setMarkers

public void setMarkers(int[] markerIndex,
                       int[] bestOrder,
                       java.lang.String[] name,
                       double[][] r)

alignMarkers

public void alignMarkers()

getNMarker

public int getNMarker()

getLength

public double getLength()

getMarker

public MarkerBean getMarker(int i)

getMarkerIndexArray

public int[] getMarkerIndexArray()

getMarkerIndex

public int getMarkerIndex(int i)

getMarkerName

public java.lang.String getMarkerName(int i)

getMarkerLocation

public double getMarkerLocation(int i)

getMarkerBootProb

public double getMarkerBootProb(int i)

setMarkerBootProb

public boolean setMarkerBootProb(int i,
                                 double bootProb)

getMapFunction

public int getMapFunction()
Returns:

setMapFunction

public void setMapFunction(int i)

show

public void show()

showLocation

public void showLocation()

showBootProb

public void showBootProb()

getName

public java.lang.String getName()
Returns:

setName

public void setName(java.lang.String string)
Parameters:
string -